YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38493020
Organism:	Homo sapiens
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38493020.

Description	E-value	Query Range	Subject Range
gi\|47207293 - gi\|47207293\|emb\|CAG07279.1\| unnamed protein product [Tetraodon nigroviridis]	443.0	[0..9]	[275..664]
COPG2_MOUSE - Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=1 SV=1	442.0	[0..9]	[275..606]
gi\|50756023 - gi\|50756023\|ref\|XP_414981.1\| PREDICTED: similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (...	442.0	[0..9]	[275..601]
gi\|157817775, gi... - gi\|157817775\|ref\|NP_001100399.1\| hypothetical protein LOC301742 [Rattus norvegicus], gi\|149065190\|gb...	440.0	[0..9]	[275..606]
COPG2_TAKRU - Coatomer subunit gamma-2 OS=Takifugu rubripes GN=copg2 PE=3 SV=1	440.0	[0..9]	[275..608]
COPG2 - coatomer protein complex, subunit gamma 2	439.0	[0..9]	[275..606]
gi\|6179934, gi\|1... - gi\|6179934\|gb\|AAF05717.1\|AF191561_1 coatomer protein gamma2-COP [Danio rerio], gi\|18858453\|ref\|NP_57...	439.0	[0..9]	[275..608]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHHHHHMTR QEIFQEQLAA VPEFRGLGPL FKSSPEPVAL TESETEYVIR CTKHTFTNHM  60
   61 VFQFDCTNTL NDQTLENVTV QMEPTEAYEV LXYVPARSLP YNQPGTCYTL VALPKEDPTA 120
  121 VACTFSCMMK FTVKDCDPTT GETDDEGYED EYVLEDLEVT VADHIQKVMK LNFEAAWDEV 180
  181 GDEFEKEETF TLSTIKTLEE AVGNIVKFLG MHPCERSDKV PDNKNTHTLL LAGVFRGGHD 240
  241 ILVRSRLLLL DTVTMQVTAR SLEELPVDII LASVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	121.0
Match:	1r4xA
Description:	Crystal Structure Analys of the Gamma-COPI Appendage domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits