YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|40889414, gi\|...
Organism:	Homo sapiens
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40889414, gi|....

Description	E-value	Query Range	Subject Range
gi\|62860262 - gi\|62860262\|ref\|NP_001016657.1\| hypothetical protein LOC549411 [Xenopus (Silurana) tropicalis]	205.0	[0..1]	[117..55]
gi\|77735985, gi\|... - gi\|77735985\|ref\|NP_001029691.1\| Bcl-2 inhibitor of transcription [Bos taurus], gi\|60650282\|gb\|AAX313...	201.0	[0..1]	[117..63]
gi\|160774426, gi... - gi\|163914807\|ref\|NP_001106615.1\| hypothetical protein LOC100127838 [Xenopus (Silurana) tropicalis], ... gi\|63101426, gi\|... - gi\|66472682\|ref\|NP_001018371.1\| hypothetical protein LOC553556 [Danio rerio], gi\|63101426\|gb\|AAH9507...	199.0	[0..1]	[117..60]
ENSPTRT00000017368 - null PTRH2 - peptidyl-tRNA hydrolase 2 gi\|190690369, gi... - gi\|190691749\|gb\|ACE87649.1\| peptidyl-tRNA hydrolase 2 protein [synthetic construct], gi\|190690369\|gb...	199.0	[0..1]	[117..63]
gi\|109114555, gi... - gi\|109114555\|ref\|XP_001109316.1\| PREDICTED: similar to Bcl-2 inhibitor of transcription isoform a is...	198.0	[0..1]	[117..63]
gi\|62078455, gi\|... - gi\|62078455\|ref\|NP_001013882.1\| Bcl-2 inhibitor of transcription [Rattus norvegicus], gi\|54035568\|gb...	197.0	[0..1]	[117..65]
PTH2_MOUSE - Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=1 SV=1	196.0	[0..1]	[117..65]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEYKMILVVR NDLKMGKGKV AAQCSHAAVS AYKQIQRRNP EMLKQWEYCG QPKVVVKAPD  60
   61 EETLIALLAH AKMLGLTVSL IQDAGRTQIA PGSQTVLGIG PGPADLIDKV TGHLKLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.09691
Match:	1q7sA
Description:	Crystal structure of bit1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.00445818053203	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: