YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38492877
Organism:	Drosophila melanogaster
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38492877.

Description	E-value	Query Range	Subject Range
gi\|119115683, gi... - gi\|119115683\|ref\|XP_318413.3\| ENSANGP00000015957 [Anopheles gambiae str. PEST], gi\|116119501\|gb\|EAA1...	86.0	[0..2]	[77..16]
pad-PB - The gene poils au dos is referred to in FlyBase by the symbol Dmel\pad (CG10309, FBgn0038418). It is...	83.0	[0..1]	[76..15]
gi\|91082357 - gi\|91082357\|ref\|XP_967585.1\| PREDICTED: similar to CG5569-PA [Tribolium castaneum]	81.0	[0..2]	[78..11]
gi\|157135426, gi... - gi\|157135426\|ref\|XP_001656653.1\| hypothetical protein AaeL_AAEL003275 [Aedes aegypti], gi\|108881282\|...	81.0	[0..2]	[78..17]

Back

Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DICRLCLRGV SGAQMCLQIF DVDSGESKVA EVLRQHFWFE VLPNDEISKV ICNVCWTQVS  60
   61 EFHQFYVSIQ EAQVIYATTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.045757
Match:	1pzwA
Description:	Crystal structure of the zinc finger associated domain of the Drosophila transcription factor Grauzone
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.270879137859077	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: