YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30749838
Organism:	Thermotoga maritima
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30749838.

Description	E-value	Query Range	Subject Range
gi\|119720590, gi... - gi\|119720590\|ref\|YP_921085.1\| HEPN domain-containing protein [Thermofilum pendens Hrk 5], gi\|1195257...	143.0	[0..3]	[130..1]
gi\|222526711, gi... - gi\|222526711\|ref\|YP_002571182.1\| HEPN domain protein [Chloroflexus sp. Y-400-fl], gi\|222450590\|gb\|AC... gi\|76164494, gi\|... - gi\|76260577\|ref\|ZP_00768210.1\| HEPN [Chloroflexus aurantiacus J-10-fl], gi\|76164494\|gb\|EAO58641.1\| H...	141.0	[0..14]	[133..10]
gi\|18161127, gi\|... - gi\|18313583\|ref\|NP_560250.1\| hypothetical protein PAE2783 [Pyrobaculum aerophilum str. IM2], gi\|1816...	139.0	[0..3]	[131..4]
gi\|7450156 - pir\|\|A72356 conserved hypothetical protein - Thermotoga maritima (strain MSB8) gi\|15643379, gi\|... - gi\|4981133\|gb\|AAD35698.1\|AE001735_11 conserved hypothetical protein [Thermotoga maritima MSB8], gi\|1...	133.0	[0..13]	[135..1]
gi\|55772022, gi\|... - gi\|55980609\|ref\|YP_143906.1\| hypothetical protein TTHA0640 [Thermus thermophilus HB8], gi\|55772022\|d...	131.0	[0..13]	[133..8]
gi\|88604289, gi\|... - gi\|88604289\|ref\|YP_504467.1\| amidophosphoribosyltransferase [Methanospirillum hungatei JF-1], gi\|881...	131.0	[0..13]	[133..509]
gi\|145409405, gi... - gi\|82499901\|ref\|ZP_00885335.1\| HEPN [Caldicellulosiruptor saccharolyticus DSM 8903], gi\|82402103\|gb\|...	131.0	[0..16]	[134..15]
gi\|7518627 - pir\|\|H71148 hypothetical protein PH0402 - Pyrococcus horikoshii gi\|3256794, gi\|1... - gi\|3256794\|dbj\|BAA29477.1\| 140aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14590309\|...	129.0	[0..1]	[135..1]
gi\|48852699 - ref\|ZP_00306883.1\| COG2250: Uncharacterized conserved protein related to C-terminal domain of eukary... gi\|68140719, gi\|... - gi\|69268873\|ref\|ZP_00609505.1\| HEPN [Ferroplasma acidarmanus Fer1], gi\|68140719\|gb\|EAM94016.1\| HEPN ...	128.0	[0..13]	[134..9]
gi\|83753524, gi\|... - gi\|83753524\|pdb\|1WOL\|A Chain A, Crystal Structure Of St0689, An Archaeal Hepn Homologue, gi\|15920917...	128.0	[0..13]	[133..8]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDKIHHHH HHMDAAKDDL EHAKHDLEHG FYNWACFSSQ QAAEKAVKAV FQRXGAQAWG  60
   61 YSVPDFLGEL SSRFEIPEEL MDHALELDKA CIPTRYPDAL PSGSPRNRYS RIEAERLVNY 120
  121 AEKIIRFCED LLSRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1o3uA
Description:	Hypothetical protein TM0613
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.372436499192166	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: