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View Structure Prediction Details

Protein: gi|33356941
Organism: Homo sapiens
Length: 165 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33356941.

Description E-value Query
Range
Subject
Range
gi|47940239 - gi|47940239|gb|AAH72094.1| LOC432141 protein [Xenopus laevis]
122.0 [0..2] [160..878]
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
117.0 [0..2] [160..1885]
gi|109108832 - gi|109108832|ref|XP_001090730.1| PREDICTED: apolipoprotein A-IV [Macaca mulatta]
116.0 [0..18] [163..147]
APOA1_MESAU - Apolipoprotein A-I OS=Mesocricetus auratus GN=APOAI PE=2 SV=1
114.0 [0..19] [164..24]
APOA1_RAT, APA1_RAT - Apolipoprotein A-I precursor (Apo-AI) (ApoA-I) - Rattus norvegicus (Rat), (P04639) Apolipoprotein A-...
111.0 [0..19] [164..24]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVEQAVETEP EPELRQQTEW QSGQRWELAL GRFWDYLRWV QTLSEQVQEE LLSSQVTQEL  60
   61 RALMDETMKE LKAYKSELEE QLTPVAEETR ARLSKELQAA QARLGADMED VRGRLVQYRG 120
  121 EVQAMLGQST EELRVRLASH LRKLRKRLLR DADDLQKRLA VYQAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.30103
Match: 1ya9A
Description: Crystal Structure of the 22kDa N-Terminal Fragment of Mouse Apolipoprotein E
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle