YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47169313, gi\|...
Organism:	Homo sapiens
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47169313, gi|....

Description	E-value	Query Range	Subject Range
gi\|114629521 - gi\|114629521\|ref\|XP_507656.2\| PREDICTED: UPF2 regulator of nonsense transcripts homolog [Pan troglod...	264.0	[0..1]	[248..944]
gi\|5262681, gi\|7... - pir\|\|T12507 hypothetical protein DKFZp434D222.1 - human (fragment), gi\|5262681\|emb\|CAB45771.1\| hypot...	259.0	[0..1]	[248..193]
gi\|16117302 - gi\|16117302\|dbj\|BAB16725.2\| hypothetical protein [Macaca fascicularis]	257.0	[0..1]	[248..180]
gi\|109506162 - gi\|109506162\|ref\|XP_001071022.1\| PREDICTED: similar to UPF2 regulator of nonsense transcripts homolo...	255.0	[0..1]	[248..766]
gi\|82799492, gi\|... - gi\|82799492\|ref\|XP_925783.1\| PREDICTED: similar to UPF2 regulator of nonsense transcripts homolog is...	255.0	[0..1]	[248..766]
gi\|73949064 - gi\|73949064\|ref\|XP_857902.1\| PREDICTED: similar to UPF2 regulator of nonsense transcripts homolog is...	252.0	[0..1]	[248..767]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPPLQEYVRK LLYKDLSKVT TEKVLRQMRK LPWQDQEVKD YVICCMINIW NVKYNSIHCV  60
   61 ANLLAGLVLY QEDVGIHVVD GVLEDIRLGM EVNQPKFNQR RISSAKFLGE LYNYRMVESA 120
  121 VIFRTLYSFT SFGVNPDGSP SSLDPPEHLF RIRLVCTILD TCGQYFDRGS SKRKLDCFLV 180
  181 YFQRYVWWKK SLEVWTKDHP FPIDIDYMIS DTLELLRPKI KLCNSLEESI RQVQDLEREF 240
  241 LIKLGLVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	1uw4B
Description:	The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.373576425899935	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: