YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47169314, gi\|...
Organism:	Homo sapiens
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47169314, gi|....

Description	E-value	Query Range	Subject Range
gi\|73989572 - gi\|73989572\|ref\|XP_849752.1\| PREDICTED: similar to UPF3 regulator of nonsense transcripts homolog A ...	168.0	[0..1]	[88..66]
gi\|67971906 - gi\|67971906\|dbj\|BAE02295.1\| unnamed protein product [Macaca fascicularis]	167.0	[0..1]	[88..67]
UPF3A - UPF3 regulator of nonsense transcripts homolog A (yeast)	167.0	[0..1]	[88..67]
gi\|76632002 - gi\|76632002\|ref\|XP_607889.2\| PREDICTED: similar to UPF3 regulator of nonsense transcripts homolog A ...	167.0	[0..1]	[88..66]
gi\|50730498 - gi\|50730498\|ref\|XP_416933.1\| PREDICTED: similar to UPF3 regulator of nonsense transcripts homolog A ...	164.0	[0..1]	[88..213]
gi\|58865890, gi\|... - gi\|58865890\|ref\|NP_001012159.1\| UPF3 regulator of nonsense transcripts homolog A [Rattus norvegicus]...	160.0	[0..1]	[88..65]
gi\|123231912, gi... - gi\|74959788\|ref\|NP_080849.1\| UPF3 regulator of nonsense transcripts homolog B [Mus musculus], gi\|742...	159.0	[0..1]	[88..50]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSKVVIRRLP PTLTKEQLQE HLQPMPEHDY FEFFSNDTSL YPHMYARAYI NFKNQEDIIL  60
   61 FRDRFDGYVF LDNKGQEYPA IVEFAPFQKA A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1uw4A
Description:	The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.950788308762215	bayes_pls_golite062009
nucleic acid binding	0.29562225149076	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: