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View Structure Prediction Details

Protein: gi|47169278, gi|...
Organism: Arabidopsis thaliana
Length: 171 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47169278, gi|....

Description E-value Query
Range
Subject
Range
gi|21536744 - gi|21536744|gb|AAM61076.1| putative jasmonic acid regulatory protein [Arabidopsis thaliana]
266.0 [0..4] [171..1]
gi|6175246 - gi|6175246|gb|AAF04915.1|AF011555_1 jasmonic acid 2 [Lycopersicon esculentum]
265.0 [0..4] [171..1]
gi|62546189, gi|... - gi|66394516|gb|AAY46124.1| NAC domain protein NAC4 [Glycine max], gi|62546189|gb|AAX85981.1| NAC4 pr...
265.0 [0..4] [171..1]
gi|31322582 - gi|31322582|gb|AAP35056.1| NAC-domain protein 485 [Brassica napus]
264.0 [0..4] [171..1]
gi|51871853 - gi|51871853|gb|AAU12055.1| jasmonic acid 2 [Solanum tuberosum]
259.0 [0..4] [171..1]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSHMGIQETD PLTQLSLPPG FRFYPTDEEL MVQYLCRKAA GYDFSLQLIA EIDLYKFDPW  60
   61 VLPNKALFGE KEWYFFSPRD RKYPNGSRPN RVAGSGYWKA TGTDKIISTE GQRVGIKKAL 120
  121 VFYIGKAPKG TKTNWIMHEY RLIEPSRRNG STKLDDWVLC RIYKKQSSAQ K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.522879
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle