YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47169184
Organism:	Escherichia coli
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47169184.

Description	E-value	Query Range	Subject Range
Y4133_LEPIN - UPF0189 protein LA_4133 OS=Leptospira interrogans GN=LA_4133 PE=3 SV=1 Y4133_LEPIN - Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae sero...	221.0	[0..1]	[172..1]
gi\|16760024 - gi\|16760024\|ref\|NP_455641.1\| hypothetical protein STY1184 [Salmonella enterica subsp. enterica serov... gi\|25348556, gi\|... - gi\|25348556\|pir\|\|AD0636 conserved hypothetical protein STY1184 [imported] - Salmonella enterica subs... gi\|29142205, gi\|... - gi\|29142205\|ref\|NP_805547.1\| hypothetical protein t1773 [Salmonella enterica subsp. enterica serovar...	221.0	[0..1]	[177..8]
Y3295_LEPIC - UPF0189 protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhagen... Y3295_LEPIC - Macro domain-containing protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae se...	220.0	[0..1]	[172..1]
lcl\|NC_016856.1_... - [gene=STM14_1313] [protein=hypothetical protein] [protein_id=YP_005236897.1] [location=1191175..1191... gi\|213855353 - gi\|213855353\|ref\|ZP_03383593.1\| hypothetical protein SentesT_15332 [Salmonella enterica subsp. enter... gi\|213648866 - gi\|213648866\|ref\|ZP_03378919.1\| hypothetical protein SentesTy_17238 [Salmonella enterica subsp. ente... gi\|214002375 - gi\|214002375\|ref\|ZP_03413110.1\| hypothetical protein Salmonellentericaenterica_19146 [Salmonella ent... gi\|213052365 - gi\|213052365\|ref\|ZP_03345243.1\| hypothetical protein Salmoneentericaenterica_05196 [Salmonella enter... YMDB_SALTY - O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=y... gi\|213024676 - gi\|213024676\|ref\|ZP_03339123.1\| hypothetical protein Salmonelentericaenterica_20201 [Salmonella ente... YMDB_SALTY - O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium GN=ymdB PE=3 SV=1 gi\|213621336 - gi\|213621336\|ref\|ZP_03374119.1\| hypothetical protein SentesTyp_29012 [Salmonella enterica subsp. ent... YMDB_SALTI - O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi GN=ymdB PE=3 SV=1 gi\|213427732 - gi\|213427732\|ref\|ZP_03360482.1\| hypothetical protein SentesTyphi_20380 [Salmonella enterica subsp. e... gi\|197939883, gi... - gi\|198245367\|ref\|YP_002215991.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Dublin st... gi\|197244218, gi... - gi\|197265963\|ref\|ZP_03166037.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Saintpaul ... YMDB_SALTY - UPF0189 protein ymdB OS=Salmonella typhimurium GN=ymdB PE=3 SV=1 gi\|207857345, gi... - gi\|207857345\|ref\|YP_002243996.1\| hypothetical protein SEN1901 [Salmonella enterica subsp. enterica s... YMDB_SALTI - UPF0189 protein ymdB OS=Salmonella typhi GN=ymdB PE=3 SV=1 gi\|199602223, gi... - gi\|200389778\|ref\|ZP_03216389.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Virchow st... gi\|205331947, gi... - gi\|205331947\|gb\|EDZ18711.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|167994006, gi... - gi\|205328030\|gb\|EDZ14794.1\| protein YmdB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|194469514, gi... - gi\|194469514\|ref\|ZP_03075498.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|168467092, gi... - gi\|195630410\|gb\|EDX49036.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|167553071, gi... - gi\|205322423\|gb\|EDZ10262.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Saintpaul str....	220.0	[0..1]	[177..1]
gi\|76883617, gi\|... - gi\|77165303\|ref\|YP_343828.1\| Appr-1-p processing [Nitrosococcus oceani ATCC 19707], gi\|76883617\|gb\|A... gi\|207090470 - gi\|207090470\|gb\|EDZ67741.1\| Appr-1-p processing enzyme family protein [Nitrosococcus oceani AFC27] gi\|254434137, gi... - gi\|254434137\|ref\|ZP_05047645.1\| Appr-1-p processing enzyme family protein [Nitrosococcus oceani AFC2...	220.0	[0..1]	[176..1]
gi\|56413865, gi\|... - gi\|56413865\|ref\|YP_150940.1\| hypothetical protein SPA1704 [Salmonella enterica subsp. enterica serov... gi\|197362788, gi... - gi\|197362788\|ref\|YP_002142425.1\| hypothetical protein SSPA1585 [Salmonella enterica subsp. enterica ...	220.0	[0..1]	[177..1]
YMDB_ECOL6 - O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ym... EG13874 - O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthas... YMDB_ECO57 - O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O157:H7 GN=ymdB PE=3 SV=1 YMDB_ECOL6 - O-acetyl-ADP-ribose deacetylase OS=Escherichia coli O6 GN=ymdB PE=3 SV=1 gi\|15801162, gi\|... - gi\|15801162\|ref\|NP_287179.1\| hypothetical protein Z1679 [Escherichia coli O157:H7 EDL933], gi\|125145... YMDB_ECOLI - UPF0189 protein ymdB - Escherichia coli gi\|188018211, gi... - gi\|188018211\|gb\|EDU56333.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 str.... gi\|189368687, gi... - gi\|189368687\|gb\|EDU87103.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 str.... gi\|168754523, gi... - gi\|189358237\|gb\|EDU76656.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 str.... gi\|75240643, gi\|... - gi\|75240643\|ref\|ZP_00724560.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|74311600, gi\|... - gi\|74311600\|ref\|YP_310019.1\| hypothetical protein SSON_1058 [Shigella sonnei Ss046], gi\|73855077\|gb\|... gi\|157077736, gi... - gi\|75190105\|ref\|ZP_00703372.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|117623234, gi... - gi\|117623234\|ref\|YP_852147.1\| hypothetical protein APECO1_130 [Escherichia coli APEC O1], gi\|1155123... gi\|75235956, gi\|... - gi\|75235956\|ref\|ZP_00720093.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|124498783, gi... - gi\|124531164\|ref\|ZP_01701519.1\| Appr-1-p processing domain protein [Escherichia coli B], gi\|12449878... gi\|82544488, gi\|... - gi\|82544488\|ref\|YP_408435.1\| hypothetical protein SBO_2021 [Shigella boydii Sb227], gi\|81245899\|gb\|A... gi\|254287960, gi... - gi\|254287960\|ref\|YP_003053708.1\| hypothetical protein ECD_01042 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973053, gi... - gi\|254161152\|ref\|YP_003044260.1\| hypothetical protein ECB_01042 [Escherichia coli B str. REL606], gi... gi\|254792429, gi... - gi\|254792429\|ref\|YP_003077266.1\| hypothetical protein ECSP_1347 [Escherichia coli O157:H7 str. TW143... gi\|83570509, gi\|... - gi\|83570509\|ref\|ZP_00921953.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|83586419, gi\|... - gi\|83586419\|ref\|ZP_00925053.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|4062616, gi\|8... - gi\|89107892\|ref\|AP_001672.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|91210195, gi\|... - gi\|91210195\|ref\|YP_540181.1\| hypothetical protein UTI89_C1168 [Escherichia coli UTI89], gi\|91071769\|... gi\|13360887, gi\|... - gi\|15830677\|ref\|NP_309450.1\| hypothetical protein ECs1423 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110342814, gi... - gi\|110641222\|ref\|YP_668952.1\| hypothetical protein ECP_1038 [Escherichia coli 536], gi\|110342814\|gb\|... EG13874 - O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthas... gi\|227886599, gi... - gi\|227886599\|ref\|ZP_04004404.1\| appr-1-p processing enzyme domain protein [Escherichia coli 83972], ... gi\|237706972, gi... - gi\|237706972\|ref\|ZP_04537453.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238860462, gi... - gi\|238900300\|ref\|YP_002926096.1\| hypothetical protein BWG_0894 [Escherichia coli BW2952], gi\|2388604... gi\|251784578, gi... - gi\|251784578\|ref\|YP_002998882.1\| hypothetical protein B21_01049 [Escherichia coli BL21], gi\|24237685... gi\|208805619, gi... - gi\|208805619\|ref\|ZP_03247956.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 ... gi\|195935434 - gi\|195935434\|ref\|ZP_03080816.1\| hypothetical protein EscherichcoliO157_03087 [Escherichia coli O157:... gi\|208737599, gi... - gi\|208822114\|ref\|ZP_03262433.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 ... gi\|208731574, gi... - gi\|208814926\|ref\|ZP_03256105.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 ... gi\|215486255, gi... - gi\|215486255\|ref\|YP_002328686.1\| hypothetical protein E2348C_1136 [Escherichia coli O127:H6 str. E23... gi\|209396250, gi... - gi\|209396250\|ref\|YP_002269893.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7... gi\|218553623, gi... - gi\|218553623\|ref\|YP_002386536.1\| hypothetical protein ECIAI1_1079 [Escherichia coli IAI1], gi\|218360... gi\|217318600, gi... - gi\|217328173\|ref\|ZP_03444255.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 ... gi\|168773887, gi... - gi\|187770456\|gb\|EDU34300.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 str.... gi\|189363116, gi... - gi\|189363116\|gb\|EDU81535.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 str.... gi\|168789977, gi... - gi\|189370489\|gb\|EDU88905.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 str.... gi\|188999104, gi... - gi\|188999104\|gb\|EDU68090.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 str.... gi\|170020558, gi... - gi\|170020558\|ref\|YP_001725512.1\| hypothetical protein EcolC_2554 [Escherichia coli ATCC 8739], gi\|16... gi\|168799321, gi... - gi\|189378270\|gb\|EDU96686.1\| appr-1-p processing enzyme domain protein [Escherichia coli O157:H7 str.... gi\|170681971, gi... - gi\|170681971\|ref\|YP_001744138.1\| appr-1-p processing domain-containing protein [Escherichia coli SMS... gi\|169888532, gi... - gi\|170080697\|ref\|YP_001730017.1\| hypothetical protein ECDH10B_1117 [Escherichia coli str. K-12 subst... gi\|218688998, gi... - gi\|218688998\|ref\|YP_002397210.1\| hypothetical protein ECED1_1189 [Escherichia coli ED1a], gi\|2184265... gi\|218557926, gi... - gi\|218557926\|ref\|YP_002390839.1\| hypothetical protein ECS88_1057 [Escherichia coli S88], gi\|21836469... gi\|218700452, gi... - gi\|218700452\|ref\|YP_002408081.1\| hypothetical protein ECIAI39_2118 [Escherichia coli IAI39], gi\|2183...	217.0	[0..1]	[177..1]
gi\|188487977, gi... - gi\|75513490\|ref\|ZP_00735894.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|157066250, gi... - gi\|75195231\|ref\|ZP_00705301.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of...	217.0	[0..1]	[177..1]
gi\|114845116, gi... - gi\|167040047\|ref\|YP_001663032.1\| appr-1-p processing domain-containing protein [Thermoanaerobacter s... gi\|167037379, gi... - gi\|167037379\|ref\|YP_001664957.1\| appr-1-p processing domain-containing protein [Thermoanaerobacter p... gi\|241904082, gi... - gi\|241904082\|ref\|ZP_04788793.1\| Appr-1-p processing domain protein [Thermoanaerobacter brockii subsp... gi\|242231120, gi... - gi\|242257357\|ref\|ZP_04802225.1\| Appr-1-p processing domain protein [Thermoanaerobacter sp. X513], gi...	215.0	[0..1]	[175..1]
gi\|192927805, gi... - gi\|75257483\|ref\|ZP_00728986.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|190903036, gi... - gi\|75229951\|ref\|ZP_00716468.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|194428417, gi... - gi\|75210320\|ref\|ZP_00710482.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|218351311, gi... - gi\|218694579\|ref\|YP_002402246.1\| hypothetical protein EC55989_1158 [Escherichia coli 55989], gi\|2183... gi\|209918299, gi... - gi\|209918299\|ref\|YP_002292383.1\| hypothetical protein ECSE_1108 [Escherichia coli SE11], gi\|20991155...	215.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTRIHVVQG DITKLAVDVI VNAANPSLXG GGGVDGAIHR AAGPALLDAC LKVRQQQGDC  60
   61 PTGHAVITLA GDLPAKAVVH TVGPVWRGGE QNEDQLLQDA YLNSLRLVAA NSYTSVAFPA 120
  121 ISTGVYGYPR AAAAEIAVKT VSEFITRHAL PEQVYFVCYD EENAHLYERL LTQQGDEEHH 180
  181 HHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.39794
Match:	1spvA
Description:	Crystal Structure of the Putative Phosphatase of Escherichia coli, Northeast Structural Genomoics Target ER58
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.742962788585077	bayes_pls_golite062009
protein binding	0.0562678909924789	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: