YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47168725, gi\|...
Organism:	Escherichia coli
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47168725, gi|....

Description	E-value	Query Range	Subject Range
gi\|56420870, gi\|... - gi\|56420870\|ref\|YP_148188.1\| hypothetical protein GK2335 [Geobacillus kaustophilus HTA426], gi\|56380...	213.0	[0..3]	[207..1]
gi\|20808973, gi\|... - gi\|20808973\|ref\|NP_624144.1\| hypothetical protein TTE2628 [Thermoanaerobacter tengcongensis MB4], gi... gi\|20808973 - gi\|20808973\|ref\|NP_624144.1\| uncharacterized ACR, predicted metal-dependent hydrolase [Thermoanaerob...	212.0	[0..3]	[205..1]
gi\|241904071, gi... - gi\|241904071\|ref\|ZP_04788782.1\| cyclase family protein [Thermoanaerobacter brockii subsp. finnii Ako... gi\|76797210, gi\|... - gi\|76797210\|ref\|ZP_00779545.1\| Putative cyclase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|7658...	211.0	[0..3]	[206..1]
gi\|242231133, gi... - gi\|242257370\|ref\|ZP_04802238.1\| cyclase family protein [Thermoanaerobacter sp. X513], gi\|242231133\|g... gi\|114845105, gi... - gi\|167040058\|ref\|YP_001663043.1\| cyclase family protein [Thermoanaerobacter sp. X514], gi\|166854298\|...	209.0	[0..3]	[206..1]
gi\|146395757, gi... - gi\|88936859\|ref\|ZP_01142455.1\| cyclase, putative [Geobacter uraniumreducens Rf4], gi\|88916404\|gb\|EAR...	208.0	[0..2]	[206..11]
gi\|28203941, gi\|... - gi\|28211500\|ref\|NP_782444.1\| polyketide cyclase [Clostridium tetani E88], gi\|28203941\|gb\|AAO36381.1\|...	207.0	[0..3]	[204..1]
gi\|110601817, gi... - gi\|222054176\|ref\|YP_002536538.1\| cyclase family protein [Geobacter sp. FRC-32], gi\|221563465\|gb\|ACM1...	202.0	[0..3]	[203..1]
gi\|91200121 - gi\|91200121\|emb\|CAJ73164.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	202.0	[0..3]	[202..10]
gi\|147919223, gi... - gi\|147919223\|ref\|YP_687041.1\| putative cyclase [uncultured methanogenic archaeon RC-I], gi\|110622437...	201.0	[0..3]	[205..1]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAMKVYDVTA PIYEGMPVYK NKPEKQPKRT TITNGYVTES RIDMDVHTGT HIDAPLHMVE  60
   61 GGATFETIPL NDLVGPCKLF DLTHVNDRIT KDDIAHLDIQ EGDFVLFKTK NSFEDAFHFE 120
  121 FIFVAEDAAR YLADKQIRGV GIDALGIERA QEGHPTHKTL FSAGVIIIEG LRLKDVPEGR 180
  181 YFMVAAPLKL VGTDAAPARV LLFDREP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1r61A
Description:	The structure of predicted metal-dependent hydrolase from Bacillus stearothermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits