YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|47168528, gi\|...
Organism:	Homo sapiens
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47168528, gi|....

Description	E-value	Query Range	Subject Range
Mad-PA - The gene Mothers against dpp is referred to in FlyBase by the symbol Dmel\Mad (CG12399, FBgn0011648)... gi\|220952702 - gi\|220952702\|gb\|ACL88894.1\| Mad-PA [synthetic construct]	262.0	[0..1]	[144..17]
gi\|108878800, gi... - gi\|157110270\|ref\|XP_001651031.1\| mothers against dpp protein [Aedes aegypti], gi\|108878800\|gb\|EAT430...	259.0	[0..4]	[144..46]
gi\|91085359 - gi\|91085359\|ref\|XP_971286.1\| PREDICTED: similar to Mothers against dpp protein [Tribolium castaneum]	258.0	[0..2]	[144..32]
gi\|58386297, gi\|... - gi\|58386297\|ref\|XP_314661.2\| ENSANGP00000005009 [Anopheles gambiae str. PEST], gi\|55239746\|gb\|EAA100...	258.0	[0..4]	[144..20]
gi\|46948818 - gi\|46948818\|gb\|AAT07308.1\| mothers against Dpp [Anopheles gambiae] gi\|118785428, gi... - gi\|118785428\|ref\|XP_314661.3\| AGAP008551-PA [Anopheles gambiae str. PEST], gi\|116127732\|gb\|EAA10070....	257.0	[0..4]	[144..20]
gi\|66506782 - gi\|66506782\|ref\|XP_392819.2\| PREDICTED: similar to Mothers against decapentaplegic homolog 5 (SMAD 5...	257.0	[0..1]	[144..16]
gi\|19422000 - gi\|19422000\|gb\|AAL87851.1\|AF435864_1 Smad1 [Hydra vulgaris]	256.0	[0..1]	[144..4]
gi\|2351035 - gi\|2351035\|dbj\|BAA22032.1\| Smad 3 [Homo sapiens]	254.0	[0..1]	[144..1]
SMAD3_CHICK - Mothers against decapentaplegic homolog 3 OS=Gallus gallus GN=SMAD3 PE=2 SV=1	254.0	[0..1]	[144..1]
gi\|76626537 - gi\|76626537\|ref\|XP_869904.1\| PREDICTED: similar to mothers against decapentaplegic-like 9 isoform 2 ...	253.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSILPFTPP IVKRLLGWKK GEQNGQEEKW CEKAVKSLVK KLKKTGQLDE LEKAITTQNV  60
   61 NTKCITIPRS LDGRLQVSHR KGLPHVIYCR LWRWPDLHSH HELRAMELCE FAFNMKKDEV 120
  121 CVNPYHYQRV ETPVLPPVLV PRHT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.221849
Match:	1ozjA
Description:	Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits