YRC Public Data Repository - Protein Structure Prediction

Protein:	ATSK_PSEPU
Organism:	Pseudomonas putida
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATSK_PSEPU.

Description	E-value	Query Range	Subject Range
gi\|95108463, gi\|... - gi\|95108463\|emb\|CAK13157.1\| Alkylsulfatase AtsK [Pseudomonas entomophila L48], gi\|104779476\|ref\|YP_6... gi\|95108463 - gi\|95108463\|emb\|CAK13157.1\| Alkylsulfatase AtsK [Pseudomonas entomophila L48]	289.0	[0..1]	[301..1]
gi\|47168456, gi\|... - gi\|47168461\|pdb\|1OIK\|D Chain D, Crystal Structure Of The Alkylsulfatase Atsk, A Non-Heme Fe(Ii) Alph...	289.0	[0..1]	[301..1]
gi\|68348015, gi\|... - gi\|70733716\|ref\|YP_257356.1\| taurine catabolism dioxygenase TauD [Pseudomonas fluorescens Pf-5], gi\|...	288.0	[0..1]	[300..1]
gi\|77380444, gi\|... - gi\|77456441\|ref\|YP_345946.1\| taurine dioxygenase [Pseudomonas fluorescens Pf0-1], gi\|77380444\|gb\|ABA...	284.0	[0..1]	[301..1]
gi\|75704251, gi\|... - gi\|75910526\|ref\|YP_324822.1\| taurine catabolism dioxygenase TauD/TfdA [Anabaena variabilis ATCC 2941...	273.0	[0..15]	[300..6]
gi\|152986871, gi... - gi\|94413540\|ref\|ZP_01293421.1\| hypothetical protein PaerP_01004715 [Pseudomonas aeruginosa PA7], gi\|...	271.0	[0..1]	[301..1]
gi\|49084842 - gi\|49084842\|gb\|AAT51233.1\| PA0193 [synthetic construct]	270.0	[0..1]	[301..1]
gi\|32043351, gi\|... - gi\|32043351\|ref\|ZP_00140613.1\| COG2175: Probable taurine catabolism dioxygenase [Pseudomonas aerugin...	270.0	[0..1]	[301..1]
gi\|84318414, gi\|... - gi\|84318414\|ref\|ZP_00966838.1\| COG2175: Probable taurine catabolism dioxygenase [Pseudomonas aerugin... gi\|15595391, gi\|... - gi\|9946028\|gb\|AAG03583.1\|AE004457_4 hypothetical protein PA0193 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|218888938, gi... - gi\|218888938\|ref\|YP_002437802.1\| putative alkylsulfatase [Pseudomonas aeruginosa LESB58], gi\|2187691... gi\|11348799 - pir\|\|F83621 hypothetical protein PA0193 [imported] - Pseudomonas aeruginosa (strain PAO1)	270.0	[0..1]	[301..1]

Back

Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNAALATAP HALELDVHPV AGRIGAEIRG VKLSPDLDAA TVEAIQAALV RHKVIFFRGQ  60
   61 THLDDQSQEG FAKLLGEPVA HPTVPVVDGT RYLLQLDGAQ GQRANSWHTD VTFVEAYPKA 120
  121 SILRSVVAPA SGGDTVWANT AAAYQELPEP LRELADKLWA VHSNEYDYAS LKPDIDPAKL 180
  181 ERHRKVFTST VYETEHPVVR VHPISGERAL QLGHFVKRIK GYSLADSQHL FAVLQGHVTR 240
  241 LENTVRWRWE AGDVAIWDNR ATQHYAVDDY GTQPRIVRRV TLAGEVPVGV DGQLSRTTRK 300
  301 G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.39794
Match:	1oihA
Description:	Crystal structure of the alkylsulfatase AtsK, a non-heme Fe(II) alphaketoglutarate dependent Dioxygenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.41007985416065	bayes_pls_golite062009
catalytic activity	1.29176034651701	bayes_pls_golite062009
oxidoreductase activity	0.95783232811757	bayes_pls_golite062009
taurine dioxygenase activity	0.594076608400231	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: