YRC Public Data Repository - Protein Structure Prediction

Protein:	FABP4_RAT
Organism:	Rattus norvegicus
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABP4_RAT.

Description	E-value	Query Range	Subject Range
gi\|114658435 - gi\|114658435\|ref\|XP_001142851.1\| PREDICTED: similar to cellular retinoic acid-binding protein; CRABP...	176.0	[0..1]	[131..245]
FABP7_CHICK - Fatty acid-binding protein, brain OS=Gallus gallus GN=FABP7 PE=2 SV=2	174.0	[0..1]	[132..1]
gi\|74007087 - gi\|74007087\|ref\|XP_548843.2\| PREDICTED: similar to Fatty acid-binding protein, adipocyte (AFABP) (Ad...	173.0	[0..1]	[132..52]
FABP7_BOVIN - Fatty acid-binding protein, brain OS=Bos taurus GN=FABP7 PE=1 SV=2	173.0	[0..1]	[132..1]
CCDS5127.1_1 - null gi\|109072829, gi... - gi\|109072829\|ref\|XP_001108559.1\| PREDICTED: fatty acid binding protein 7, brain isoform 2 [Macaca mu... gi\|90082527 - gi\|90082527\|dbj\|BAE90445.1\| unnamed protein product [Macaca fascicularis]	173.0	[0..1]	[132..1]
gi\|68535004, gi\|... - gi\|68535004\|ref\|NP_001020400.1\| fatty acid binding protein 7, brain [Sus scrofa], gi\|62866607\|gb\|AAY...	172.0	[0..1]	[132..1]
gi\|48146231 - gi\|48146231\|emb\|CAG33338.1\| FABP7 [Homo sapiens]	171.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCDAFVGTWK LVSSENFDDY MKEVGVGFAT RKVAGMAKPN LIISVEGDLV VIRSESTFKN  60
   61 TEISFKLGVE FDEITPDDRK VKSIITLDGG VLVHVQKWDG KSTTIKKRRD GDKLVVECVM 120
  121 KGVTSTRVYE RA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2qm9A
Description:	No description for 2qm9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits