YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224164843, gi...
Organism:	Populus trichocarpa
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224164843, gi....

Description	E-value	Query Range	Subject Range
gi\|82737867, gi\|... - gi\|82737867\|ref\|ZP_00900711.1\| dioxygenase, TauD/TfdA family [Pseudomonas putida F1], gi\|82715106\|gb...	284.0	[0..11]	[308..2]
gi\|26986913, gi\|... - gi\|26986913\|ref\|NP_742338.1\| TauD/TfdA family dioxygenase [Pseudomonas putida KT2440], gi\|24981522\|g...	283.0	[0..11]	[308..2]
gi\|77456365, gi\|... - gi\|77456365\|ref\|YP_345870.1\| taurine catabolism dioxygenase TauD/TfdA [Pseudomonas fluorescens Pf0-1...	283.0	[0..26]	[308..16]
gi\|70733644, gi\|... - gi\|70733644\|ref\|YP_257284.1\| taurine catabolism dioxygenase TauD [Pseudomonas fluorescens Pf-5], gi\|...	282.0	[0..28]	[308..15]
gi\|67088539, gi\|... - gi\|67154406\|ref\|ZP_00416151.1\| Taurine dioxygenase [Azotobacter vinelandii AvOP], gi\|67088539\|gb\|EAM... gi\|67154406 - gi\|67154406\|ref\|ZP_00416151.1\| Taurine dioxygenase [Azotobacter vinelandii AvOP]	281.0	[0..15]	[308..2]
gi\|28872310, gi\|... - gi\|28872310\|ref\|NP_794929.1\| TauD/TfdA family dioxygenase [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UU4\|Q87UU4... - Dioxygenase, TauD/TfdA family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_5198 PE=4 ...	279.0	[0..12]	[308..2]
gi\|78034869, gi\|... - gi\|78046439\|ref\|YP_362614.1\| taurine dioxygenase [Xanthomonas campestris pv. vesicatoria str. 85-10]...	278.0	[0..1]	[308..1]
gi\|116696156, gi... - gi\|116696156\|ref\|YP_841732.1\| taurine catabolism dioxygenase [Ralstonia eutropha H16], gi\|113530655\|...	277.0	[0..1]	[307..1]
gi\|21241600, gi\|... - gi\|21241600\|ref\|NP_641182.1\| taurine dioxygenase [Xanthomonas axonopodis pv. citri str. 306], gi\|211...	276.0	[0..24]	[308..2]
gi\|49085592 - gi\|49085592\|gb\|AAT51290.1\| PA2310 [synthetic construct]	276.0	[0..15]	[308..2]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIATADASV DTSANLATES STRSLQDFEI RPLGAALGAE VIGVDLGRPL SHGDFQRIHQ  60
   61 AHLDHHVLVF RDQRITPAQQ IAFSRRFGPL QIHVLNQFQL PGHPEVLIVS NVIENGKPIG 120
  121 LGDAGHFWHS DLSYKETPSL GSLLHARELP AEGGDTLFAN MHTAWESLPE ALQRKVADLT 180
  181 AEHTYLARYA ELQARSPWRP NLTPEQIAQV KPVVHPVVRT HPETGRRALF VSEHFTTRIV 240
  241 GLPDAESRAI LDELFAHSVK PEHVYRHQWR EHDLVFWDNR SLLHLAAGTP DQLRRVMYRT 300
  301 TIEGDQPF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	1gqwA
Description:	Taurine/alpha-ketoglutarate dioxygenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits