YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167638425, gi...
Organism:	Bacillus anthracis str. A0193
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167638425, gi....

Description	E-value	Query Range	Subject Range
gi\|89202775, gi\|... - gi\|89202775\|ref\|ZP_01181486.1\| Cobalamin synthesis protein/P47K:Cobalamin synthesis CobW, C-terminal...	4.0E-71	[1..319]	[1..319]
gi\|229144662, gi... - gi\|229144662\|ref\|ZP_04273063.1\| Cobalamin synthesis protein [Bacillus cereus BDRD-ST24], gi\|22863879... gi\|229127454, gi... - gi\|229127454\|ref\|ZP_04256447.1\| Cobalamin synthesis protein [Bacillus cereus BDRD-Cer4], gi\|22865599... gi\|228673930, gi... - gi\|229109511\|ref\|ZP_04239102.1\| Cobalamin synthesis protein [Bacillus cereus Rock1-15], gi\|228673930... gi\|30020156, gi\|... - gi\|30020156\|ref\|NP_831787.1\| zinc transporter [Bacillus cereus ATCC 14579], gi\|29895706\|gb\|AAP08988.... gi\|228838864, gi... - gi\|228920753\|ref\|ZP_04084093.1\| Cobalamin synthesis protein [Bacillus thuringiensis serovar huazhong...	4.0E-71	[1..319]	[1..319]
gi\|46204015 - gi\|46204015\|ref\|ZP_00050615.2\| COG0523: Putative GTPases (G3E family) [Magnetospirillum magnetotacti...	6.0E-71	[2..317]	[10..326]
gi\|23124055, gi\|... - gi\|23124055\|ref\|ZP_00106071.1\| COG0523: Putative GTPases (G3E family) [Nostoc punctiforme PCC 73102]...	6.0E-71	[2..318]	[7..322]
gi\|52143402, gi\|... - gi\|52143402\|ref\|YP_083428.1\| cobalamin synthesis protein [Bacillus cereus E33L], gi\|51976871\|gb\|AAU1...	7.0E-71	[1..319]	[1..319]
RPA0861 - RPA0861 possible CobW protein involved in cobalamin synthesis 957713:958801 forward MW:40347	2.0E-70	[2..318]	[19..360]
gi\|74419980, gi\|... - gi\|75675110\|ref\|YP_317531.1\| cobalamin synthesis protein, CobW [Nitrobacter winogradskyi Nb-255], gi...	3.0E-70	[2..318]	[9..348]
gi\|42781167, gi\|... - gi\|42781167\|ref\|NP_978414.1\| cobalamin synthesis protein/P47K family protein [Bacillus cereus ATCC 1...	3.0E-70	[4..319]	[1..316]
gi\|228900642, gi... - gi\|228900642\|ref\|ZP_04064862.1\| Cobalamin synthesis protein [Bacillus thuringiensis IBL 4222], gi\|22... gi\|228794653, gi... - gi\|228965038\|ref\|ZP_04126136.1\| Cobalamin synthesis protein [Bacillus thuringiensis serovar sotto st... gi\|228851858, gi... - gi\|228907770\|ref\|ZP_04071624.1\| Cobalamin synthesis protein [Bacillus thuringiensis IBL 200], gi\|228... gi\|74492985, gi\|... - gi\|75759554\|ref\|ZP_00739643.1\| Low-affinity zinc transport protein [Bacillus thuringiensis serovar i...	4.0E-70	[4..319]	[1..316]
gi\|78519314, gi\|... - gi\|78693759\|ref\|ZP_00858273.1\| conserved hypothetical protein [Bradyrhizobium sp. BTAi1], gi\|7851931...	7.0E-70	[3..317]	[46..361]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYEMIPVTIL TGFLGSGKTT LLNRILTENH GQKLAVIVNE IGKIGIDNQL IMNVEEEIME  60
   61 MTNGCLCCTV REDLLVALKQ LLDVKAEGKM DFDGLVIETT GLANPGPIIQ TFFLDPVIQS 120
  121 AYQINGVVTV VDSYHIHKHF EKGLEAKEQI AFADVILVNK LDLIEESEKE NLLHELQGIN 180
  181 PTAKLIQSTN CDVDIPSLLK IQTFKTKDTL QIYPHKEHNH LEGVKSFVLR EERPLDLQKL 240
  241 NEWMSAVVQE LGEYLYRYKG ILSIDGVDKR IVFQGVHTLF AASYDREWQE GEERVSEVVF 300
  301 IGKDINKEWF QEHFEECVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.30103
Match:	1nijA
Description:	Hypothetical protein YjiA, N-terminal domain; Hypothetical protein YjiA, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: