YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|46015385, gi|...
Organism: Homo sapiens
Length: 290 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46015385, gi|....

Description E-value Query
Range
Subject
Range
gi|70955601 - gi|70955601|gb|AAZ16362.1| variable lymphocyte receptor B [Eptatretus burgeri]
225.0 [0..3] [242..23]
gi|76162305 - gi|76162305|gb|ABA40223.1| variable lymphocyte receptor diversity region [Petromyzon marinus]
220.0 [0..3] [242..1]
gi|81175465 - gi|81175465|gb|ABB59070.1| variable lymphocyte receptor A [Eptatretus stoutii]
217.0 [0..4] [261..32]
gi|113477255, gi... - gi|71673924|ref|ZP_00671672.1| Small GTP-binding protein domain [Trichodesmium erythraeum IMS101], g...
216.0 [0..3] [289..65]

Back

Predicted Domain #1
Region A:
Residues: [1-290]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPICEVSKVA SHLEVNCDKR NLTALPPDLP KDTTILHLSE NLLYTFSLAT LMPYTRLTQL  60
   61 NLDRAELTKL QVDGTLPVLG TLDLSHNQLQ SLPLLGQTLP ALTVLDVSFN RLTSLPLGAL 120
  121 RGLGELQELY LKGNELKTLP PGLLTPTPKL EKLSLANNNL TELPAGLLNG LENLDTLLLQ 180
  181 ENSLYTIPKG FFGSHLLPFA FLHGNPWLCN CEILYFRRWL QDNAENVYVW KQGVDVKAMT 240
  241 SNVASVQCDN SDKFPVYKYP GKGCPTLGDE GDTDLYDYYP EEDTEGDKVR 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 48.045757
Match: 1m0zA
Description: von Willebrand factor binding domain of glycoprotein Ib alpha
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle