YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33356943, gi\|...
Organism:	Homo sapiens
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33356943, gi|....

Description	E-value	Query Range	Subject Range
gi\|62653131, gi\|... - gi\|62653131\|ref\|XP_235694.3\| PREDICTED: similar to activating transcription factor 7 [Rattus norvegi...	100.0	[0..3]	[78..322]
gi\|74185990, gi\|... - gi\|74185990\|dbj\|BAE34138.1\| unnamed protein product [Mus musculus], gi\|148672013\|gb\|EDL03960.1\| acti...	100.0	[0..3]	[78..322]
gi\|62907038, gi\|... - gi\|71834550\|ref\|NP_001025376.1\| activating transcription factor 7a [Danio rerio], gi\|62907038\|gb\|AAY...	100.0	[0..3]	[78..331]
gi\|76617710 - gi\|76617710\|ref\|XP_615033.2\| PREDICTED: similar to Cyclic-AMP-dependent transcription factor ATF-7 (...	99.0	[0..3]	[78..333]
gi\|114644470 - gi\|114644470\|ref\|XP_001137995.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] gi\|208965794 - gi\|208965794\|dbj\|BAG72911.1\| activating transcription factor 7 [synthetic construct] gi\|28913, gi\|119... - gi\|5802980\|ref\|NP_006847.1\| activating transcription factor 7 isoform 2 [Homo sapiens], gi\|28913\|emb...	99.0	[0..3]	[78..322]
gi\|73996191 - gi\|73996191\|ref\|XP_856972.1\| PREDICTED: similar to Cyclic-AMP-dependent transcription factor ATF-7 (...	99.0	[0..3]	[78..227]
ATF7_PONPY - Cyclic AMP-dependent transcription factor ATF-7 - Pongo pygmaeus (Orangutan) ATF7_PONAB - Cyclic AMP-dependent transcription factor ATF-7 OS=Pongo abelii GN=ATF7 PE=2 SV=1	99.0	[0..3]	[78..322]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKSKAKKTVD KHSDEYKIRR ERNNIAVRKS RDKAKMRNLE TQHKVLELTA ENERLQKKVE  60
   61 QLSRELSTLR NLFKQLPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	1gtwA
Description:	CRYSTAL STRUCTURE OF C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE TOM-1A PROMOTER
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits