YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|222872792, gi...
Organism:	Populus trichocarpa
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222872792, gi....

Description	E-value	Query Range	Subject Range
gi\|46315875, gi\|... - gi\|78060833\|ref\|YP_367408.1\| hypothetical protein Bcep18194_C7720 [Burkholderia sp. 383], gi\|7796538...	211.0	[0..7]	[285..12]
gi\|72120710, gi\|... - gi\|73537373\|ref\|YP_297740.1\| hypothetical protein Reut_B3538 [Ralstonia eutropha JMP134], gi\|7212071...	209.0	[0..6]	[285..7]
gi\|27382358, gi\|... - gi\|27382358\|ref\|NP_773887.1\| putative cytoplasmic protein [Bradyrhizobium japonicum USDA 110], gi\|27...	207.0	[0..4]	[283..5]
gi\|84352304 - gi\|84352304\|ref\|ZP_00977271.1\| COG3777: Uncharacterized conserved protein [Burkholderia cenocepacia ...	207.0	[0..3]	[285..8]
gi\|105897719, gi... - gi\|67656673\|ref\|ZP_00454055.1\| conserved hypothetical protein [Burkholderia cenocepacia AU 1054], gi... gi\|67102562, gi\|... - gi\|67663793\|ref\|ZP_00461072.1\| conserved hypothetical protein [Burkholderia cenocepacia HI2424], gi\|...	206.0	[0..3]	[285..8]
gi\|91777550, gi\|... - gi\|91777550\|ref\|YP_552758.1\| hypothetical protein Bxe_B2585 [Burkholderia xenovorans LB400], gi\|9169...	205.0	[0..2]	[285..1]
gi\|91682071, gi\|... - gi\|91975615\|ref\|YP_568274.1\| MaoC-like dehydratase [Rhodopseudomonas palustris BisB5], gi\|91682071\|g...	204.0	[0..2]	[286..1]
gi\|116694630, gi... - gi\|116694630\|ref\|YP_728841.1\| hypothetical protein H16_B0679 [Ralstonia eutropha H16], gi\|113529129\|...	204.0	[0..3]	[286..5]
gi\|33567208, gi\|... - gi\|33599612\|ref\|NP_887172.1\| hypothetical protein BB0622 [Bordetella bronchiseptica RB50], gi\|335672...	203.0	[0..1]	[285..1]
gi\|33595317 - gi\|33595317\|ref\|NP_882960.1\| hypothetical protein BPP0616 [Bordetella parapertussis 12822] gi\|33565394 - gi\|33565394\|emb\|CAE36201.1\| conserved hypothetical protein [Bordetella parapertussis]	203.0	[0..1]	[285..1]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTPTLEQLR EWIGRTESRT ETLAAEPVQG LAATFDLDGD ALVSQPLPPL WHWLYFLPRA  60
   61 PQHEIGVDGH PALGGFLPPV PLPRRMWAGS EVTFKRGLRV GETVTKTSTI TDVQHKSGRT 120
  121 GELWFVTVDH ELSVNGETAL NERHDIVYRA MPERGQPQPP RPRLAHTAQF GRSLKADPVL 180
  181 LFRYSALTFN GHRIHYDLDY VRDVEGYPGL IVHGPMQAML MLELLRHERP DARVKRFGFR 240
  241 GLAPLFHLDT VTVGGMDDAE TPGKVILWTG DDAGGQAMAG WAEVEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	1s9cA
Description:	Crystal structure analysis of the 2-enoyl-CoA hydratase 2 domain of human peroxisomal multifunctional enzyme type 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits