YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42543757
Organism:	Saccharomyces cerevisiae
Length:	170 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42543757.

Description	E-value	Query Range	Subject Range
gi\|42543761, gi\|... - gi\|42543765\|pdb\|1USV\|H Chain H, The Structure Of The Complex Between Aha1 And Hsp90, gi\|42543763\|pdb...	228.0	[0..1]	[170..1]
gi\|70993698, gi\|... - gi\|70993698\|ref\|XP_751696.1\| Aha1 domain family [Aspergillus fumigatus Af293], gi\|66849330\|gb\|EAL896... gi\|159125382 - gi\|159125382\|gb\|EDP50499.1\| Aha1 domain family [Aspergillus fumigatus A1163]	214.0	[0..15]	[169..1]
gi\|83768045 - gi\|83768045\|dbj\|BAE58184.1\| unnamed protein product [Aspergillus oryzae] gi\|169771433 - gi\|169771433\|ref\|XP_001820186.1\| hypothetical protein [Aspergillus oryzae RIB40]	209.0	[0..15]	[169..1]
gi\|114194047, gi... - gi\|115391237\|ref\|XP_001213123.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	207.0	[0..15]	[169..1]
gi\|90306567, gi\|... - gi\|90306567\|gb\|EAS36198.1\| hypothetical protein CIMG_01552 [Coccidioides immitis RS], gi\|119194355\|r...	206.0	[0..15]	[169..1]
gi\|40743055, gi\|... - gi\|67538864\|ref\|XP_663206.1\| hypothetical protein AN5602.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	206.0	[0..15]	[169..1]
gi\|44985776 - gi\|44985776\|gb\|AAS54400.1\| AGL090Wp [Ashbya gossypii ATCC 10895] gi\|45201006, gi\|... - gi\|45201006\|ref\|NP_986576.1\| AGL090Wp [Ashbya gossypii ATCC 10895], gi\|44985776\|gb\|AAS54400.1\| AGL09...	204.0	[0..15]	[170..1]
gi\|39974079, gi\|... - gi\|39974079\|ref\|XP_368430.1\| hypothetical protein MG00814.4 [Magnaporthe grisea 70-15], gb\|EAA49156....	203.0	[0..15]	[169..1]
gi\|32405586, gi\|... - gi\|32405586\|ref\|XP_323406.1\| hypothetical protein [Neurospora crassa], gi\|28917128\|gb\|EAA26847.1\| hy... gi\|85077937 - gi\|85077937\|ref\|XP_956083.1\| hypothetical protein NCU04087 [Neurospora crassa OR74A]	200.0	[0..15]	[169..1]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSHHHHHH GMASMVVNNP NNWHWVDKNC IGWAKEYFKQ KIVGVEAGSV KDKKYAKIKS  60
   61 VSSIEGDCEV NQRKGKVISL FDLKITVLIE GHVDSKDGSA LPFEGSINVP EVAFDSEASS 120
  121 YQFDISIFKE TSELSEAKPL IRSELLPKLR QIFQQFGKDL LATHGNDIQV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.30103
Match:	1usvB
Description:	The Structure of the complex between Aha1 and HSP90
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
chaperone binding	2.87169826684641	bayes_pls_golite062009
ATPase regulator activity	2.31076586548557	bayes_pls_golite062009
binding	2.05200237600398	bayes_pls_golite062009
ATPase activator activity	1.99816875782377	bayes_pls_golite062009
protein binding	1.12549021331477	bayes_pls_golite062009
heat shock protein binding	0.760536282739404	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: