YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42543230, gi\|...
Organism:	Homo sapiens
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42543230, gi|....

Description	E-value	Query Range	Subject Range
gi\|60654535 - gi\|60654535\|gb\|AAX29958.1\| crystallin beta B1 [synthetic construct]	270.0	[0..1]	[210..43]
gi\|109451690, gi... - gi\|61364293\|gb\|AAX42520.1\| crystallin beta B1 [synthetic construct], gi\|109451690\|emb\|CAK54716.1\| CR... HGNC:2397\|MIM:60... - beta B1 CRYBB1 - crystallin, beta B1	270.0	[0..1]	[210..43]
gi\|55660929 - gi\|55660929\|ref\|XP_515047.1\| PREDICTED: crystallin, beta B1 isoform 2 [Pan troglodytes]	268.0	[0..1]	[210..43]
gi\|73995382 - gi\|73995382\|ref\|XP_543459.2\| PREDICTED: similar to crystallin, beta B1 [Canis familiaris]	267.0	[0..8]	[210..46]
gi\|9739217 - gi\|9739217\|gb\|AAF97950.1\|AF286652_1 betaB1-crystallin [Rattus norvegicus]	267.0	[0..8]	[210..43]
CRBB1_PIG - Beta-crystallin B1 OS=Sus scrofa GN=CRYBB1 PE=2 SV=1	263.0	[0..12]	[210..51]
gi\|22137737 - gi\|22137737\|gb\|AAH29012.1\| Crybb1 protein [Mus musculus]	263.0	[0..8]	[210..48]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVPITSAKAA ELPPGNYRLV VFELENFQGR RAEFSGEXSN LADRGFDRVR SIIVSAGPWV  60
   61 AFEQSNFRGE MFILEKGEYP RWNTWSSSYR SDRLMSFRPI KMDAQEHKIS LFEGANFKGN 120
  121 TIEIQGDDAP SLWVYGFSDR VGSVKVSSGT WVGYQYPGYR GYQYLLEPGD FRHWNEWGAF 180
  181 QPQMQSLRRL RDKQWHLEGS FPVLATEPPK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.39794
Match:	1okiA
Description:	Crystal structure of truncated human beta-B1-crystallin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of eye lens	3.95613127220698	bayes_pls_golite062009
binding	1.49962891213419	bayes_pls_golite062009
protein binding	0.439215717175215	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: