YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195935575
Organism:	Escherichia coli O157:H7 str. EC4024
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195935575.

Description	E-value	Query Range	Subject Range
gi\|81240350, gi\|... - gi\|82776202\|ref\|YP_402551.1\| disulfide oxidoreductase [Shigella dysenteriae Sd197], gi\|81240350\|gb\|A...	202.0	[0..1]	[185..1]
gi\|26248578, gi\|... - gi\|26248578\|ref\|NP_754618.1\| Thiol:disulfide interchange protein dsbE [Escherichia coli CFT073], gi\|...	199.0	[0..1]	[185..1]
gi\|91191663, gi\|... - gi\|91223577\|ref\|ZP_01258842.1\| thiol:disulfide interchange protein DsbE [Vibrio alginolyticus 12G01]...	193.0	[0..1]	[185..1]
gi\|90579961, gi\|... - gi\|90579961\|ref\|ZP_01235769.1\| thiol-disulfide interchange protein CcmG [Vibrio angustum S14], gi\|90... gi\|89073447, gi\|... - gi\|89073447\|ref\|ZP_01159970.1\| thiol-disulfide interchange protein CcmG [Photobacterium sp. SKA34], ...	192.0	[0..1]	[184..1]
gi\|75854958, gi\|... - gi\|75854958\|ref\|ZP_00762625.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio sp. Ex25]...	192.0	[0..1]	[185..1]
DSBE_VIBCH - Thiol:disulfide interchange protein DsbE OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor ... gi\|153213710, gi... - gi\|153213710\|ref\|ZP_01948962.1\| thiol:disulfide interchange protein DsbE [Vibrio cholerae 1587], gi\|... gi\|153222227, gi... - gi\|153222227\|ref\|ZP_01953006.1\| thiol:disulfide interchange protein DsbE [Vibrio cholerae MAK 757], ... gi\|126509913, gi... - gi\|153819546\|ref\|ZP_01972213.1\| thiol:disulfide interchange protein DsbE [Vibrio cholerae NCTC 8457]... gi\|229511905, gi... - gi\|229511905\|ref\|ZP_04401384.1\| cytochrome c-type biogenesis protein CcmG/DsbE thiol:disulfide oxido... gi\|229607404, gi... - gi\|229607404\|ref\|YP_002878052.1\| cytochrome c-type biogenesis protein CcmG/DsbE thiol:disulfide oxid... gi\|148875633, gi... - gi\|153828927\|ref\|ZP_01981594.1\| thiol:disulfide interchange protein DsbE [Vibrio cholerae 623-39], g... gi\|229340936, gi... - gi\|229522011\|ref\|ZP_04411428.1\| cytochrome c-type biogenesis protein CcmG/DsbE thiol:disulfide oxido... gi\|150423119, gi... - gi\|254286828\|ref\|ZP_04961781.1\| thiol:disulfide interchange protein DsbE [Vibrio cholerae AM-19226],... gi\|229343730, gi... - gi\|229519041\|ref\|ZP_04408484.1\| cytochrome c-type biogenesis protein CcmG/DsbE thiol:disulfide oxido... gi\|254849138, gi... - gi\|75829263\|ref\|ZP_00758572.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio cholerae ... gi\|229348888, gi... - gi\|229513707\|ref\|ZP_04403169.1\| cytochrome c-type biogenesis protein CcmG/DsbE thiol:disulfide oxido... gi\|149740180, gi... - gi\|153826063\|ref\|ZP_01978730.1\| thiol:disulfide interchange protein DsbE [Vibrio cholerae MZO-2], gi... gi\|229507859, gi... - gi\|229507859\|ref\|ZP_04397364.1\| cytochrome c-type biogenesis protein CcmG/DsbE thiol:disulfide oxido... gi\|75822838, gi\|... - gi\|75822838\|ref\|ZP_00752397.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio cholerae ... gi\|227010066, gi... - gi\|227082178\|ref\|YP_002810729.1\| thiol:disulfide interchange protein DsbE [Vibrio cholerae M66-2], g... gi\|146316893, gi... - gi\|75827360\|ref\|ZP_00756795.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio cholerae ... gi\|75814807, gi\|... - gi\|75814807\|ref\|ZP_00745355.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio cholerae ... DSBE_VIBCH - Thiol:disulfide interchange protein DsbE OS=Vibrio cholerae GN=dsbE PE=3 SV=1 gi\|75818717, gi\|... - gi\|75818717\|ref\|ZP_00748846.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Vibrio cholerae ...	190.0	[0..1]	[185..1]
gi\|86146104, gi\|... - gi\|86146104\|ref\|ZP_01064430.1\| thiol:disulfide interchange protein DsbE [Vibrio sp. MED222], gi\|8583... gi\|218708856, gi... - gi\|218708856\|ref\|YP_002416477.1\| Cytochrome c biogenesisprotein ccmG (Thiol:disulfide interchange pr...	190.0	[0..1]	[184..1]
gi\|90411055, gi\|... - gi\|90411055\|ref\|ZP_01219069.1\| putative thiol:disulfide interchange protein DsbE [Photobacterium pro...	190.0	[0..1]	[184..1]
gi\|84377380, gi\|... - gi\|84387697\|ref\|ZP_00990713.1\| thiol:disulfide interchange protein DsbE [Vibrio splendidus 12B01], g...	189.0	[0..1]	[184..1]
gi\|153836987, gi... - gi\|153836987\|ref\|ZP_01989654.1\| thiol:disulfide interchange protein DsbE [Vibrio parahaemolyticus AQ... gi\|28898991, gi\|... - gi\|28898991\|ref\|NP_798596.1\| thiol:disulfide interchange protein DsbE [Vibrio parahaemolyticus RIMD ... gi\|28807210 - gi\|28807210\|dbj\|BAC60480.1\| thiol:disulfide interchange protein DsbE [Vibrio parahaemolyticus RIMD 2...	188.0	[0..1]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKVLLIPL IIFLAIAAAL LWQLARNAEG DDPTNLESAL IGKPVPKFRL ESLDNPGQFY  60
   61 QADVLTQGKP VLLNVWATWC PTCRAEHQYL NQLSAQGIRV VGMNYKDDRQ KAISWLKELG 120
  121 NPYALSLFDG DGMLGLDLGV YGAPETFLID GNGIIRYRHA GDLNPRVWEE EIKPLWEKYS 180
  181 KEAAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	2b1kA
Description:	No description for 2b1kA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits