YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170686830, gi...
Organism:	Bacillus anthracis str. A0465
Length:	470 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170686830, gi....

Description	E-value	Query Range	Subject Range
gi\|51977507, gi\|... - gi\|52144038\|ref\|YP_082789.1\| (S)-2-hydroxy-acid oxidase, subunit D [Bacillus cereus E33L], gi\|519775...	0.0	[1..470]	[1..470]
gi\|89157538, gi\|... - gi\|89204477\|ref\|ZP_01183054.1\| Glycolate oxidase subunit GlcD [Bacillus weihenstephanensis KBAB4], g...	0.0	[1..470]	[1..470]
gi\|229090349, gi... - gi\|229090349\|ref\|ZP_04221592.1\| Glycolate oxidase subunit [Bacillus cereus Rock3-42], gi\|228692932\|g... gi\|228944994, gi... - gi\|228944994\|ref\|ZP_04107355.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar monterrey ... gi\|218902503, gi... - gi\|218902503\|ref\|YP_002450337.1\| glycolate oxidase, subunit GlcD [Bacillus cereus AH820], gi\|2185358... gi\|195991992, gi... - gi\|196035315\|ref\|ZP_03102720.1\| glycolate oxidase, subunit GlcD [Bacillus cereus W], gi\|195991992\|gb... gi\|228926426, gi... - gi\|228926426\|ref\|ZP_04089498.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar pondicheri... gi\|49477180, gi\|... - gi\|49477180\|ref\|YP_035523.1\| (S)-2-hydroxy-acid oxidase, subunit D [Bacillus thuringiensis serovar k...	0.0	[1..470]	[1..470]
gi\|42736403, gi\|... - gi\|42780484\|ref\|NP_977731.1\| glycolate oxidase, subunit GlcD [Bacillus cereus ATCC 10987], gi\|427364...	0.0	[1..470]	[1..470]
gi\|47556735, gi\|... - gi\|47566182\|ref\|ZP_00237210.1\| glycolate oxidase, subunit glcD [Bacillus cereus G9241], gi\|47556735\|...	0.0	[1..470]	[1..470]
gi\|30019448, gi\|... - gi\|30019448\|ref\|NP_831079.1\| (S)-2-hydroxy-acid oxidase chain D [Bacillus cereus ATCC 14579], gi\|298... gi\|229149596, gi... - gi\|229149596\|ref\|ZP_04277828.1\| Glycolate oxidase subunit [Bacillus cereus m1550], gi\|228633942\|gb\|E... gi\|218162991, gi... - gi\|218235034\|ref\|YP_002366079.1\| glycolate oxidase, subunit GlcD [Bacillus cereus B4264], gi\|2181629... gi\|228656651, gi... - gi\|229126711\|ref\|ZP_04255723.1\| Glycolate oxidase subunit [Bacillus cereus BDRD-Cer4], gi\|228656651\|...	0.0	[1..470]	[1..470]
gi\|228899975, gi... - gi\|228899975\|ref\|ZP_04064213.1\| Glycolate oxidase subunit [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228795337, gi... - gi\|228964353\|ref\|ZP_04125470.1\| Glycolate oxidase subunit [Bacillus thuringiensis serovar sotto str.... gi\|218544228, gi... - gi\|218896328\|ref\|YP_002444739.1\| glycolate oxidase, subunit GlcD [Bacillus cereus G9842], gi\|2185442... gi\|75760003, gi\|... - gi\|75760003\|ref\|ZP_00740070.1\| (S)-2-hydroxy-acid oxidase chain D [Bacillus thuringiensis serovar is...	0.0	[1..470]	[1..470]
gi\|89151095, gi\|... - gi\|89200934\|ref\|ZP_01179683.1\| Glycolate oxidase subunit GlcD [Bacillus cereus subsp. cytotoxis NVH ...	0.0	[1..470]	[1..470]
gi\|52078783, gi\|... - gi\|52784153\|ref\|YP_089982.1\| YsfC [Bacillus licheniformis ATCC 14580], gi\|52346655\|gb\|AAU39289.1\| Ys...	0.0	[1..470]	[1..470]
gi\|25323065 - pir\|\|B83991 glycolate oxidase subunit BH2730 [imported] - Bacillus halodurans (strain C-125) gi\|10175351, gi\|... - gi\|15615293\|ref\|NP_243596.1\| glycolate oxidase subunit [Bacillus halodurans C-125], gi\|10175351\|dbj\|...	0.0	[1..470]	[1..470]

Back

Predicted Domain #1

Region A:
Residues: [1-470]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKQIIDSF VSIVGEDNVD TSNMGRLTYS YDATPNFQAM PDAVIAPRNT NEIAEVLKVC  60
   61 NTHKIPVYVR GSGTNLCAGT CPLEGGIVLI FRHMNNILEI DEENLTITVQ AGVITLDIIK 120
  121 AVEEKGLFYP PDPSSMKIST IGGNINENSG GLRGLKYGVT RDYVMGLELV LPNGDIIRTG 180
  181 GKLAKDVAGY DLTRLFIGSE GTLGVVTEAI LKLVPMPETK KTMLALYEDI NEAARAVSSI 240
  241 IANKIIPATL EFLDQPTIEV VEEFAQIGLP TDVKAILLIE QDGPPEVVNR DIEKMANVCR 300
  301 SMNAVDVRVA KDEAEADALR TARRSALSAL ARLKPTTILE DATVPRSQIA PMVEAINAIA 360
  361 KKYNIPICTF GHVGDGNLHP TCMTDARNEE EMHRAEQAFA EIFAKAIELG GTITGEHGVG 420
  421 AMKAPYLEMK LGKEGITAMQ GIKHAFDPNN IMNPGKMFAK DTRKRVVVER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.045757
Match:	2uuuA
Description:	No description for 2uuuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits