YRC Public Data Repository - Protein Structure Prediction

Protein:	CRL_ECO8A
Organism:	Escherichia coli IAI1
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRL_ECO8A.

Description	E-value	Query Range	Subject Range
gi\|77974369 - gi\|77974369\|ref\|ZP_00829910.1\| hypothetical protein YfreA_01001952 [Yersinia frederiksenii ATCC 3364...	244.0	[0..1]	[133..1]
CRL_SALCH - Sigma factor-binding protein Crl OS=Salmonella choleraesuis (strain SC-B67) GN=crl PE=3 SV=1 CRL_SALCH - Sigma factor-binding protein crl OS=Salmonella choleraesuis GN=crl PE=3 SV=1 CRL_SALCH - Sigma factor-binding protein crl OS=Salmonella choleraesuis GN=crl PE=3 SV=1	243.0	[0..1]	[133..1]
CRL_ECODH - Sigma factor-binding protein Crl OS=Escherichia coli (strain K12 / DH10B) GN=crl PE=3 SV=1 CRL_ECOBW - Sigma factor-binding protein Crl OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=crl PE=3 SV=1 gi\|1786435, gi\|1... - gi\|1786435\|gb\|AAC73344.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. ... gi\|85674393, gi\|... - gi\|89107113\|ref\|AP_000893.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 subst... CRL_ECOLI - Sigma factor-binding protein crl (Curlin genes transcriptional activatory protein) - Escherichia col... gi\|16128226\|ref\|... - DNA-binding transcriptional regulator [Escherichia coli K12], DNA-binding transcriptional regulator ...	241.0	[0..1]	[133..1]
gi\|30040101, gi\|... - gi\|30061857\|ref\|NP_836028.1\| DNA-binding transcriptional regulator Crl [Shigella flexneri 2a str. 24... CRL_SHIFL - Sigma factor-binding protein Crl OS=Shigella flexneri GN=crl PE=3 SV=3 gi\|24111730, gi\|... - gi\|24111730\|ref\|NP_706240.1\| DNA-binding transcriptional regulator Crl [Shigella flexneri 2a str. 30...	241.0	[0..1]	[133..1]
CRL_SALPA - Sigma factor-binding protein crl OS=Salmonella paratyphi A GN=crl PE=3 SV=1 CRL_SALPA - Sigma factor-binding protein Crl OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=crl PE=3 S... CRL_SALTI - Sigma factor-binding protein crl OS=Salmonella typhi GN=crl PE=3 SV=1 CRL_SALTY - Sigma factor-binding protein crl OS=Salmonella typhimurium GN=crl PE=2 SV=1 lcl\|NC_016856.1_... - [gene=crl] [protein=DNA-binding transcriptional regulator Crl] [protein_id=YP_005235993.1] [location... CRL_SALTY - Sigma factor-binding protein crl OS=Salmonella typhimurium GN=crl PE=2 SV=1 gi\|213648696 - gi\|213648696\|ref\|ZP_03378749.1\| DNA-binding transcriptional regulator Crl [Salmonella enterica subsp... gi\|213609288 - gi\|213609288\|ref\|ZP_03369114.1\| DNA-binding transcriptional regulator Crl [Salmonella enterica subsp... gi\|213582329 - gi\|213582329\|ref\|ZP_03364155.1\| DNA-binding transcriptional regulator Crl [Salmonella enterica subsp... gi\|213425146 - gi\|213425146\|ref\|ZP_03357896.1\| DNA-binding transcriptional regulator Crl [Salmonella enterica subsp... gi\|213852529 - gi\|213852529\|ref\|ZP_03382061.1\| DNA-binding transcriptional regulator Crl [Salmonella enterica subsp... CRL_SALTI - Sigma factor-binding protein Crl OS=Salmonella typhi GN=crl PE=3 SV=1 gi\|16759314 - gi\|16759314\|ref\|NP_454931.1\| DNA-binding transcriptional regulator Crl [Salmonella enterica subsp. e... CRL_SALPK - Sigma factor-binding protein Crl OS=Salmonella paratyphi A (strain AKU_12601) GN=crl PE=3 SV=1 CRL_SALHS - Sigma factor-binding protein Crl OS=Salmonella heidelberg (strain SL476) GN=crl PE=3 SV=1 CRL_SALTY - Sigma factor-binding protein Crl OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|205340284, gi... - gi\|205340284\|gb\|EDZ27048.1\| sigma factor-binding protein crl [Salmonella enterica subsp. enterica se... gi\|29142913, gi\|... - gi\|29142913\|ref\|NP_806255.1\| DNA-binding transcriptional regulator Crl [Salmonella enterica subsp. e... gi\|205328626, gi... - gi\|205328626\|gb\|EDZ15390.1\| sigma factor-binding protein crl [Salmonella enterica subsp. enterica se...	240.0	[0..1]	[133..1]
gi\|77978376 - gi\|77978376\|ref\|ZP_00833806.1\| hypothetical protein YintA_01001852 [Yersinia intermedia ATCC 29909]	240.0	[0..1]	[133..1]
CRL_ECOL6 - Sigma factor-binding protein crl OS=Escherichia coli O6 GN=crl PE=3 SV=3 CRL_ECOL6 - Sigma factor-binding protein Crl OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=c... gi\|227884744, gi... - gi\|227884744\|ref\|ZP_04002549.1\| DNA-binding transcriptional regulator Crl [Escherichia coli 83972], ...	239.0	[0..1]	[133..1]
gi\|189361042, gi... - gi\|189361042\|gb\|EDU79461.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4486],... gi\|187768392, gi... - gi\|187768392\|gb\|EDU32236.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4196],... gi\|188999635, gi... - gi\|188999635\|gb\|EDU68621.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4076],... gi\|168789713, gi... - gi\|189370758\|gb\|EDU89174.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC869], ... gi\|168750224, gi... - gi\|188015599\|gb\|EDU53721.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4113],... gi\|189355749, gi... - gi\|189355749\|gb\|EDU74168.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC4401],... CRL_ECO57 - Sigma factor-binding protein Crl OS=Escherichia coli O157:H7 GN=crl PE=3 SV=3 gi\|209745280, gi... - pir\|\|A85513 hypothetical protein crl [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|254791400, gi... - gi\|254791400\|ref\|YP_003076237.1\| DNA-binding transcriptional regulator [Escherichia coli O157:H7 str... gi\|12513014, gi\|... - gi\|15799945\|ref\|NP_285957.1\| DNA-binding transcriptional regulator Crl [Escherichia coli O157:H7 EDL... gi\|13359724, gi\|... - gi\|15829521\|ref\|NP_308294.1\| DNA-binding transcriptional regulator Crl [Escherichia coli O157:H7 str... CRL_ECO5E - Sigma factor-binding protein Crl OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=crl PE=3 SV=1 gi\|217321842, gi... - gi\|217325621\|ref\|ZP_03441705.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. TW14... gi\|195938643 - gi\|195938643\|ref\|ZP_03084025.1\| DNA-binding transcriptional regulator Crl [Escherichia coli O157:H7 ... gi\|208727815, gi... - gi\|208808014\|ref\|ZP_03250351.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC42... gi\|208734368, gi... - gi\|208813091\|ref\|ZP_03254420.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC40... gi\|208819207, gi... - gi\|208819207\|ref\|ZP_03259527.1\| sigma factor-binding protein Crl [Escherichia coli O157:H7 str. EC40...	239.0	[0..1]	[133..1]
CRL_YERPS - Sigma factor-binding protein crl OS=Yersinia pseudotuberculosis GN=crl PE=3 SV=1 gi\|165936077, gi... - gi\|89105981\|ref\|ZP_01178492.1\| hypothetical protein Ypesb_01000050 [Yersinia pestis biovar Orientali... CRL_YERPA - Sigma factor-binding protein Crl OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=crl PE=3 SV=1 CRL_YERPN - Sigma factor-binding protein Crl OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=crl PE=3 SV=1 gi\|166011076, gi... - gi\|166011076\|ref\|ZP_02231974.1\| transcriptional activator Crl [Yersinia pestis biovar Antiqua str. E... gi\|166205840, gi... - gi\|166213053\|ref\|ZP_02239088.1\| transcriptional activator Crl [Yersinia pestis biovar Antiqua str. B... gi\|167399104, gi... - gi\|167399104\|ref\|ZP_02304628.1\| transcriptional activator Crl [Yersinia pestis biovar Antiqua str. U... gi\|167421669, gi... - gi\|167421669\|ref\|ZP_02313422.1\| transcriptional activator Crl [Yersinia pestis biovar Orientalis str... gi\|167423371, gi... - gi\|167423371\|ref\|ZP_02315124.1\| transcriptional activator Crl [Yersinia pestis biovar Mediaevalis st... gi\|167469073 - gi\|167469073\|ref\|ZP_02333777.1\| transcriptional activator Crl [Yersinia pestis FV-1] gi\|229838829, gi... - gi\|229838829\|ref\|ZP_04458988.1\| DNA-binding transcriptional regulator [Yersinia pestis biovar Orient... CRL_YERPY - Sigma factor-binding protein Crl OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=crl P... gi\|229896019, gi... - gi\|229896019\|ref\|ZP_04511189.1\| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A],... CRL_YERPB - Sigma factor-binding protein Crl OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=crl PE... gi\|229899398, gi... - gi\|229899398\|ref\|ZP_04514541.1\| DNA-binding transcriptional regulator [Yersinia pestis biovar Orient... CRL_YERPE - Sigma factor-binding protein Crl OS=Yersinia pestis GN=crl PE=3 SV=1 gi\|149291347, gi... - gi\|149364934\|ref\|ZP_01886969.1\| curlin genes regulatory protein [Yersinia pestis CA88-4125], gi\|1492... CRL_YERPG - Sigma factor-binding protein Crl OS=Yersinia pestis bv. Antiqua (strain Angola) GN=crl PE=3 SV=1 gi\|45440560, gi\|... - gi\|45440560\|ref\|NP_992099.1\| DNA-binding transcriptional regulator Crl [Yersinia pestis biovar Micro... gi\|21957705, gi\|... - gi\|22124872\|ref\|NP_668295.1\| DNA-binding transcriptional regulator Crl [Yersinia pestis KIM], gi\|219... gi\|218930250, gi... - gi\|218930250\|ref\|YP_002348125.1\| DNA-binding transcriptional regulator Crl [Yersinia pestis CO92], g... CRL_YERPS - Sigma factor-binding protein Crl OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=crl P... gi\|165926647, gi... - gi\|165926647\|ref\|ZP_02222479.1\| transcriptional activator Crl [Yersinia pestis biovar Orientalis str...	239.0	[0..1]	[133..1]
CRL_ECOL5 - Sigma factor-binding protein Crl OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=crl PE=3 SV=3 CRL_ECOUT - Sigma factor-binding protein Crl OS=Escherichia coli (strain UTI89 / UPEC) GN=crl PE=3 SV=3 CRL_ECO45 - Sigma factor-binding protein Crl OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=crl PE=3 SV=1 gi\|237707741, gi... - gi\|237707741\|ref\|ZP_04538222.1\| sigma factor-binding protein crl [Escherichia sp. 3_2_53FAA], gi\|226... gi\|191171370, gi... - gi\|75241688\|ref\|ZP_00725525.1\| hypothetical protein EcolF_01001396 [Escherichia coli F11], gi\|191171... CRL_ECO81 - Sigma factor-binding protein Crl OS=Escherichia coli O81 (strain ED1a) GN=crl PE=3 SV=1 CRL_ECOK1 - Sigma factor-binding protein Crl OS=Escherichia coli O1:K1 / APEC GN=crl PE=3 SV=1	238.0	[0..1]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPSGHPKS RLIKKFTALG PYIREGKCED NRFFFDCLAV CVNVKPAPEV REFWGWWMEL  60
   61 EAQESRFTYS YQFGLFDKAG DWKSVPVKDT EVVERLEHTL REFHEKLREL LTTLNLKLEP 120
  121 ADDFRDEPVK LTA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	98.79588
Match:	PF07417.3
Description:	No description for PF07417.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits