YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165992933, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165992933, gi....

Description	E-value	Query Range	Subject Range
gi\|167052194, gi... - gi\|167399690\|ref\|ZP_02305214.1\| rare lipoprotein A/sporulation and cell division repeat protein [Yer... gi\|108808488, gi... - gi\|108808488\|ref\|YP_652404.1\| rare lipoprotein A [Yersinia pestis Antiqua], gi\|108780401\|gb\|ABG14459...	2.0E-74	[1..360]	[1..360]
gi\|162352712, gi... - gi\|77636540\|ref\|ZP_00798613.1\| COG0797: Lipoproteins [Yersinia pestis Angola], gi\|162419897\|ref\|YP_0...	6.0E-74	[1..360]	[1..360]
gi\|238790458, gi... - gi\|77973029\|ref\|ZP_00828582.1\| COG0797: Lipoproteins [Yersinia frederiksenii ATCC 33641], gi\|2387904...	7.0E-68	[1..360]	[1..372]
gi\|238729254, gi... - gi\|77979031\|ref\|ZP_00834453.1\| COG0797: Lipoproteins [Yersinia intermedia ATCC 29909], gi\|238791638\|...	2.0E-67	[1..360]	[1..367]
gi\|238720529, gi... - gi\|77962169\|ref\|ZP_00825993.1\| COG0797: Lipoproteins [Yersinia mollaretii ATCC 43969], gi\|238795410\|...	3.0E-67	[1..360]	[1..372]
gi\|77957577 - gi\|77957577\|ref\|ZP_00821629.1\| COG0797: Lipoproteins [Yersinia bercovieri ATCC 43970]	3.0E-67	[1..360]	[1..370]
gi\|37525262, gi\|... - gi\|37525262\|ref\|NP_928606.1\| rare lipoprotein A [Photorhabdus luminescens subsp. laumondii TTO1], gi...	1.0E-62	[1..359]	[1..332]
gi\|107103515 - gi\|107103515\|ref\|ZP_01367433.1\| hypothetical protein PaerPA_01004585 [Pseudomonas aeruginosa PACS2] gi\|218769942, gi... - gi\|218889719\|ref\|YP_002438583.1\| putative lipoprotein, rlpA family [Pseudomonas aeruginosa LESB58], ... gi\|126196062, gi... - gi\|84325132\|ref\|ZP_00973172.1\| COG0797: Lipoproteins [Pseudomonas aeruginosa 2192], gi\|254242684\|ref... RLPA_PSEAE - RlpA-like lipoprotein OS=Pseudomonas aeruginosa GN=rlpA PE=3 SV=1 RLPA_PSEAE - RlpA-like lipoprotein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228...	2.0E-61	[7..359]	[16..341]
gi\|152989135, gi... - gi\|94417067\|ref\|ZP_01296889.1\| hypothetical protein PaerP_01001263 [Pseudomonas aeruginosa PA7], gi\|...	6.0E-61	[7..359]	[16..341]
gi\|116052038, gi... - gi\|46164609\|ref\|ZP_00205119.1\| COG0797: Lipoproteins [Pseudomonas aeruginosa UCBPP-PA14], gi\|1160520...	2.0E-60	[7..359]	[16..340]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKEWLWVGI ASVLLSACID QPPAPQQQVQ QTYSGPVEEI GGAEPRYEPF NPNVNQDYKV  60
   61 NGQSYRIIKD PQNFSQIGLA SSYGEEARGN TTATGEIFDP NALTAAHPTL PIPSYVRVTN 120
  121 VSNGRQIVVR VNDRGPYTPG RVIDLSRAAA DRLNISNNTK VKIDFINVAP D

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.14
Match:	2bh0A
Description:	No description for 2bh0A was found.

Predicted Domain #2

Region A:
Residues: [172-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSLSGPGMVG TTIAKQSYAL PSRPDLTSSG MGTPMQQDAP ATGAAVQAID NSQLSGTDAT  60
   61 QPVASQSSGF LRAPTPVPAG VLESSEPVID SAPVTPPVVA NPGPVTTT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [280-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTSSAISGGY VVQVGALSDA QRAQSWQQSL SQRFGVPGKV SNSGSIYRVQ LGPFSHRQQA  60
   61 VDLQQRLSNE AQQQSFIVAA P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1utaA
Description:	Solution structure of the C-terminal RNP domain from the divisome protein FtsN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits