YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|206745960, gi...
Organism:	Bacillus cereus H3081.97
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|206745960, gi....

Description	E-value	Query Range	Subject Range
gi\|152026417, gi... - gi\|89201694\|ref\|ZP_01180431.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	1.0E-57	[1..235]	[1..235]
gi\|89155257, gi\|... - gi\|89206856\|ref\|ZP_01185408.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter... gi\|229020691, gi... - gi\|229020691\|ref\|ZP_04177419.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228734409, gi... - gi\|229026906\|ref\|ZP_04183230.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph...	1.0E-57	[1..235]	[1..235]
gi\|229181712, gi... - gi\|229181712\|ref\|ZP_04309035.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|218160803, gi... - gi\|218232846\|ref\|YP_002370241.1\| DNA-binding response regulator YycF [Bacillus cereus B4264], gi\|218... gi\|228629853, gi... - gi\|229153624\|ref\|ZP_04281801.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228797964, gi... - gi\|228961729\|ref\|ZP_04123333.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|206970303, gi... - gi\|206970303\|ref\|ZP_03231256.1\| DNA-binding response regulator YycF [Bacillus cereus AH1134], gi\|206... gi\|29899052, gi\|... - gi\|30023491\|ref\|NP_835122.1\| two-component response regulator yycF [Bacillus cereus ATCC 14579], gi\|...	1.0E-57	[1..235]	[1..235]
gi\|4982229, gi\|1... - gi\|4982229\|gb\|AAD36722.1\|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8], gi\|15644403... gi\|7444020 - pir\|\|D72228 response regulator DrrA - Thermotoga maritima (strain MSB8)	2.0E-57	[1..235]	[9..246]
gi\|1575577 - gi\|1575577\|gb\|AAC44436.1\| DNA-binding response regulator [Thermotoga maritima]	5.0E-57	[1..235]	[1..238]
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	8.0E-56	[3..232]	[104..334]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	5.0E-55	[4..231]	[5..229]
gi\|52144960, gi\|... - gi\|52144960\|ref\|YP_081869.1\| response regulator [Bacillus cereus E33L], gi\|51978429\|gb\|AAU19979.1\| r...	6.0E-55	[1..232]	[1..233]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGKKILVVD DEKPIADILK FNLEKEGFEI VMAHDGDEAI EKATEEQPDM VLLDIMLPGK  60
   61 DGLEVCREIR KSSEMPIIML TAKDSEIDKV LGLELGADDY VTKPFSTREL LARVKANLRR 120
  121 HQQGGAAEKE ENTEMVIGPI VINPNAYSVT KREENIELTH REFELLHYLA KHLGQVMTRE 180
  181 HLLQTVWGYD YFGDVRTVDV TVRRLREKIE DNPSHPTLIV TRRGVGYYLR DPEQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits