YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Y4460_PSEA8
Organism: Pseudomonas aeruginosa LESB58
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y4460_PSEA8.

Description E-value Query
Range		 Subject
Range
Y2261_SHESA - UPF0176 protein Shewana3_2261 OS=Shewanella sp. (strain ANA-3) GN=Shewana3_2261 PE=3 SV=1
 7.0E-95 [1..303] [1..303]
Y1760_SHESM - UPF0176 protein Shewmr4_1760 OS=Shewanella sp. (strain MR-4) GN=Shewmr4_1760 PE=3 SV=1
 1.0E-94 [1..303] [1..303]
Y2130_SHEPC - UPF0176 protein Sputcn32_2130 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=Sputcn32_2...
Y1881_SHESW - UPF0176 protein Sputw3181_1881 OS=Shewanella sp. (strain W3-18-1) GN=Sputw3181_1881 PE=3 SV=1
 3.0E-94 [1..303] [1..303]
Y1838_SHESR - UPF0176 protein Shewmr7_1838 OS=Shewanella sp. (strain MR-7) GN=Shewmr7_1838 PE=3 SV=1
 8.0E-94 [1..303] [1..303]
Y1781_SHELP - UPF0176 protein Shew_1781 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=Shew_1781 PE=3 SV=1
 1.0E-93 [1..303] [1..303]
Y2481_SHEB9 - UPF0176 protein Sbal195_2481 OS=Shewanella baltica (strain OS195) GN=Sbal195_2481 PE=3 SV=1
 1.0E-93 [1..303] [1..303]
Y522_HAHCH - UPF0176 protein HCH_00522 OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_00522 PE=3 SV=1
 2.0E-93 [1..307] [1..307]
gi|49085392 - gi|49085392|gb|AAT51274.1| PA0858 [synthetic construct]
 2.0E-93 [1..312] [1..312]
Y2378_SHEB5 - UPF0176 protein Sbal_2378 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=Sbal_2378 PE=3 SV=...
 2.0E-93 [1..303] [1..303]
gi|94428786, gi|... - gi|94499154|ref|ZP_01305692.1| predicted sulfurtransferase [Oceanobacter sp. RED65], gi|94428786|gb|...
 3.0E-93 [3..312] [7..315]

Back

Predicted Domain #1
Region A:
Residues: [1-219] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIVVAALY KFVTLDDYVA LREPLLQTLL DNGVKGTLLL AEEGINGTVS GSREGIDALF  60
   61 AWLRSDPRLA DIEHKESYCD EQPFYRTKVK LKKEIVTLGV PGVDPNKQVG QYVEAKDWNA 120
  121 LISDPEVLLI DTRNDYEVAI GTFEGAVDPK TRSFREFPEY IKAHYDPARH KKVAMFCTGG 180
  181 IRCEKASSYM LGAGFEEVFH LKGGILKYLE EVPQEQSLW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 1e0cA
Description: Sulfurtransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [220-312] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGDCFVFDNR VTVRHDLSEG EYDQCHACRN PVSLEDRQSE HYVPGISCPH CWDSLSEKTR  60
   61 AGARERQKQI ELARQRNQPH PLGRDPRQST LEN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle