YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168483199, gi...
Organism:	Streptococcus pneumoniae CDC1873-00
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168483199, gi....

Description	E-value	Query Range	Subject Range
GLGC_LACS1 - Glucose-1-phosphate adenylyltransferase OS=Lactobacillus salivarius (strain UCC118) GN=glgC PE=3 SV=... gi\|227865869, gi... - gi\|227892320\|ref\|ZP_04010125.1\| glucose-1-phosphate adenylyltransferase [Lactobacillus salivarius AT...	253.0	[0..1]	[374..1]
GLGC_CLOAB - Glucose-1-phosphate adenylyltransferase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / J... GLGC_CLOAB - Glucose-1-phosphate adenylyltransferase OS=Clostridium acetobutylicum GN=glgC PE=3 SV=1	252.0	[0..2]	[373..3]
gi\|227868451, gi... - gi\|227903564\|ref\|ZP_04021369.1\| glucose-1-phosphate adenylyltransferase [Lactobacillus acidophilus A... GLGC_LACAC - Glucose-1-phosphate adenylyltransferase OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N... GLGC_LACAC - Glucose-1-phosphate adenylyltransferase OS=Lactobacillus acidophilus GN=glgC PE=3 SV=1	251.0	[0..1]	[374..1]
gi\|220931536, gi... - gi\|89210656\|ref\|ZP_01189043.1\| Glucose-1-phosphate adenylyltransferase [Halothermothrix orenii H 168...	246.0	[0..2]	[379..4]
GLGC_LACLA - Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. lactis GN=glgC PE=3 SV=1 GLGC_LACLA - Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=glgC ...	244.0	[0..1]	[376..1]
GLGC_LACLS - Glucose-1-phosphate adenylyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=glgC ...	243.0	[0..1]	[376..1]
GLGC_STRA3 - Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=... GLGC_STRA3 - Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype III GN=glgC PE=3 SV=1	243.0	[0..1]	[374..1]
GLGC_STRR6 - Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=gl... gi\|25288676 - gi\|25288676\|pir\|\|F98000 glucose-1-phosphate adenylyltransferase (EC 2.7.7.27) [imported] - Streptoco... GLGC_STRP2 - Glucose-1-phosphate adenylyltransferase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 74...	242.0	[0..1]	[374..1]
GLGC_CLOPE - Glucose-1-phosphate adenylyltransferase OS=Clostridium perfringens (strain 13 / Type A) GN=glgC PE=3... GLGC_CLOPE - Glucose-1-phosphate adenylyltransferase OS=Clostridium perfringens GN=glgC PE=3 SV=1	242.0	[0..2]	[380..8]
GLGC_STRA5 - Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 ... gi\|76586469, gi\|... - gi\|76798161\|ref\|ZP_00780413.1\| glucose-1-phosphate adenylyltransferase [Streptococcus agalactiae 18R... GLGC_STRA5 - Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype V GN=glgC PE=3 SV=1 GLGC_STRA1 - Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype Ia GN=glgC PE=3 SV=1 GLGC_STRA1 - Glucose-1-phosphate adenylyltransferase OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 /... gi\|77410669, gi\|... - gi\|77410669\|ref\|ZP_00787028.1\| glucose-1-phosphate adenylyltransferase [Streptococcus agalactiae CJB...	240.0	[0..1]	[368..1]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNEMLALIL AGGQGTRLGK LTQSIAKPAV QFGGRYRIID FALSNCANSG IHNVGVVTQY  60
   61 QPLALNNHIG NGSSWGLDGI NSGVSILQPY SASEGNRWFE GTSHAIYQNI DYIDSVNPEY 120
  121 VLILSGDHIY KMDYDDMLQS HKDNNASLTV AVLDVPLKEA SRFGIMNTDA NNRIVEFEEK 180
  181 PAQPKSTKAS MGIYIFDWQR LRNMLVAAEK SKVGMSDFGK NVIPNYLESG ESVYAYEFSG 240
  241 YWKDVGTIES LWEANMEYIS PENALDSRNR QWKIYSRNLI SPPNFLGANA HVEDSLVVDG 300
  301 CFVDGTVKHS ILSTGAQVRE GAEVLDSVIM SGAIIGQGAK IKRAIIGEGA IISDGVEIDG 360
  361 TDEVQVVGYN EVVGVATDED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	1yp2A
Description:	Crystal structure of potato tuber ADP-glucose pyrophosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
mannosyltransferase activity	3.87594044828967	bayes_pls_golite062009
alpha-1,2-mannosyltransferase activity	3.78995004368368	bayes_pls_golite062009
uridylyltransferase activity	3.74072767898515	bayes_pls_golite062009
transferase activity	3.32517438937547	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	3.09763291641741	bayes_pls_golite062009
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	2.71761183000551	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.70047942699289	bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity	2.65167602524122	bayes_pls_golite062009
guanylyltransferase activity	2.62845487806844	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.51696952719873	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	2.46432078102948	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.33861720107822	bayes_pls_golite062009
mannose-1-phosphate guanylyltransferase activity	2.30953822963071	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
O-acyltransferase activity	1.56776114186736	bayes_pls_golite062009
nucleotidyltransferase activity	1.50551885980582	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.33788133706753	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	1.10309252319727	bayes_pls_golite062009
binding	1.09657219604879	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
glycogenin glucosyltransferase activity	0.968757748180341	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.513376694534047	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: