YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224500248
Organism:	Listeria monocytogenes Finland 1998
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224500248.

Description	E-value	Query Range	Subject Range
gi\|153167738, gi... - gi\|153167738\|ref\|ZP_01927842.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes FSL N1-017], gi\|... gi\|254931933, gi... - gi\|254931933\|ref\|ZP_05265292.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes HPB2262], gi\|153... gi\|226224500, gi... - gi\|226224500\|ref\|YP_002758607.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes Clip81459], gi\|... SYN_LISMF - Asparagine--tRNA ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=asnS PE=3 SV=1 gi\|47017218, gi\|... - gi\|47094410\|ref\|ZP_00232099.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes str. 4b H7858], g... gi\|254852800 - gi\|254852800\|ref\|ZP_05242148.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes FSL R2-503] gi\|254825609 - gi\|254825609\|ref\|ZP_05230610.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes FSL J1-194] gi\|254992078 - gi\|254992078\|ref\|ZP_05274268.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes FSL J2-064] gi\|254877986 - gi\|254877986\|ref\|ZP_05250696.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes FSL J2-071] gi\|255521649 - gi\|255521649\|ref\|ZP_05388886.1\| asparaginyl-tRNA synthetase [Listeria monocytogenes FSL J1-175]	478.0	[0..1]	[430..1]
SYN_LISIN - Asparagine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=asnS PE=3 SV=1 SYN_LISIN - Asparagine--tRNA ligase OS=Listeria innocua GN=asnS PE=3 SV=1	477.0	[0..1]	[430..1]
SYN_BACLD - Asparagine--tRNA ligase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 1220...	475.0	[0..1]	[430..1]
SYN_BACSK - Asparagine--tRNA ligase OS=Bacillus clausii (strain KSM-K16) GN=asnS PE=3 SV=1	474.0	[0..1]	[430..1]
SYN_BACSU - Asparagine--tRNA ligase OS=Bacillus subtilis GN=asnS PE=3 SV=2 SYN_BACSU - Asparagine--tRNA ligase OS=Bacillus subtilis (strain 168) GN=asnS PE=3 SV=2 gi\|221314474 - gi\|221314474\|ref\|ZP_03596279.1\| asparaginyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. ... gi\|221319396 - gi\|221319396\|ref\|ZP_03600690.1\| asparaginyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. ... gi\|221323672 - gi\|221323672\|ref\|ZP_03604966.1\| asparaginyl-tRNA synthetase [Bacillus subtilis subsp. subtilis str. ...	470.0	[0..1]	[430..1]
gi\|56380548, gi\|... - gi\|56420706\|ref\|YP_148024.1\| asparaginyl-tRNA synthetase [Geobacillus kaustophilus HTA426], gi\|56380...	470.0	[0..4]	[430..5]
gi\|293366577\|ref... - asparagine-tRNA ligase [Staphylococcus epidermidis M23864:W2(grey)] SYN_STAES - Asparagine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=asnS PE=3 SV=1 gi\|251810882, gi... - gi\|251810882\|ref\|ZP_04825355.1\| asparaginyl-tRNA synthetase [Staphylococcus epidermidis BCM-HMP0060]... SYN_STAEP - (Q8CSI9) Asparaginyl-tRNA synthetase (EC 6.1.1.22) (Asparagine--tRNA ligase) (AsnRS) gi\|282876112\|ref... - asparagine--tRNA ligase [Staphylococcus epidermidis SK135] SYN_STAEQ - Asparagine--tRNA ligase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=asnS PE=3 SV=1	469.0	[0..1]	[430..1]
SYN_BACHD - Asparaginyl-tRNA synthetase OS=Bacillus halodurans GN=asnS PE=3 SV=1 SYN_BACHD - Asparagine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 91...	469.0	[0..1]	[430..1]
SYN_STAAW - Asparagine--tRNA ligase OS=Staphylococcus aureus (strain MW2) GN=asnS PE=3 SV=1	469.0	[0..1]	[430..1]
SYN_STAHJ - Asparagine--tRNA ligase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=asnS PE=3 SV=1	468.0	[0..1]	[430..1]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITINQASE FVGKEVTIGA WLANKRSSGK IAFLQLRDGT GFMQGVVVKA EVGDDIFATA  60
   61 KALTQETSLY VTGTINEDTR SPFGYEMAVS SVEVISESHD YPITPKEHGT EFLMDHRHLW 120
  121 LRSNRQHAIM KIRNEIIRAS YEFFNKEGFL KIDPPILTGS APEGTTELFH TKYFEEDAFL 180
  181 SQSGQLYMEA AAMAFGKVFS FGPTFRAEKS KTRRHLIEFW MIEPEMAFYK LEDSLQVQEN 240
  241 YVAFLVKAVL DNCRLELDRL GRDVSHLEKM VAPFPRITYT EAIERLHELG FDDIVWGDDF 300
  301 GAPHETAIAD SFEKPVFITH YPKAIKPFYM PEDPENDQVV LCADMIAPEG YGEIIGGSER 360
  361 IHDLETLQAR MEDFDLDQEA YSWYLDLARY GSVPHSGFGL GLERTVAWIS GTEHVRETIP 420
  421 FPRLLNRLYP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits