YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167048302, gi...
Organism:	Yersinia pestis biovar Antiqua str. UG05-0454
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167048302, gi....

Description	E-value	Query Range	Subject Range
Y3206_YERPG - UPF0319 protein YpAngola_A3206 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A3206 PE=3...	1.0E-76	[1..226]	[1..226]
YCCT_SALCH - UPF0319 protein yccT OS=Salmonella choleraesuis GN=yccT PE=3 SV=1 YCCT_SALPC - UPF0319 protein YccT OS=Salmonella paratyphi C (strain RKS4594) GN=yccT PE=3 SV=1 gi\|204320308, gi... - gi\|204930849\|ref\|ZP_03221722.1\| protein YccT [Salmonella enterica subsp. enterica serovar Javiana st... YCCT_SALNS - UPF0319 protein YccT OS=Salmonella newport (strain SL254) GN=yccT PE=3 SV=1 YCCT_SALCH - UPF0319 protein YccT OS=Salmonella choleraesuis (strain SC-B67) GN=yccT PE=3 SV=1 YCCT_SALCH - UPF0319 protein yccT OS=Salmonella choleraesuis GN=yccT PE=3 SV=1	6.0E-66	[1..224]	[1..218]
YCCT_SALTY - UPF0319 protein yccT OS=Salmonella typhimurium GN=yccT PE=3 SV=1 YCCT_SALTI - UPF0319 protein yccT OS=Salmonella typhi GN=yccT PE=3 SV=1 YCCT_SALTI - UPF0319 protein YccT OS=Salmonella typhi GN=yccT PE=3 SV=1 YCCT_SALTY - UPF0319 protein yccT OS=Salmonella typhimurium GN=yccT PE=3 SV=1 gi\|16759958 - gi\|16759958\|ref\|NP_455575.1\| hypothetical protein STY1099 [Salmonella enterica subsp. enterica serov... YCCT_SALTY - UPF0319 protein YccT OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yccT PE=3 SV... gi\|29142270, gi\|... - gi\|29142270\|ref\|NP_805612.1\| hypothetical protein t1843 [Salmonella enterica subsp. enterica serovar... gi\|167552666, gi... - gi\|205322743\|gb\|EDZ10582.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YCCT_SALPB - UPF0319 protein yccT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yccT PE=3 SV=1 gi\|213622022 - gi\|213622022\|ref\|ZP_03374805.1\| hypothetical protein SentesTyp_32661 [Salmonella enterica subsp. ent... gi\|213582517 - gi\|213582517\|ref\|ZP_03364343.1\| hypothetical protein SentesTyph_15483 [Salmonella enterica subsp. en... gi\|213425896 - gi\|213425896\|ref\|ZP_03358646.1\| hypothetical protein SentesTyphi_09729 [Salmonella enterica subsp. e... gi\|213160862 - gi\|213160862\|ref\|ZP_03346572.1\| hypothetical protein Salmoneentericaenterica_12748 [Salmonella enter... gi\|214001662 - gi\|214001662\|ref\|ZP_03412397.1\| hypothetical protein Salmonellentericaenterica_14879 [Salmonella ent... gi\|213857355 - gi\|213857355\|ref\|ZP_03384326.1\| hypothetical protein SentesT_19465 [Salmonella enterica subsp. enter... gi\|197265344, gi... - gi\|197265344\|ref\|ZP_03165418.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|168821816, gi... - gi\|205341749\|gb\|EDZ28513.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168264162, gi... - gi\|205347344\|gb\|EDZ33975.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205327289, gi... - gi\|205327289\|gb\|EDZ14053.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213028754 - gi\|213028754\|ref\|ZP_03343201.1\| hypothetical protein Salmonelentericaenterica_43633 [Salmonella ente... YCCT_SALEP - UPF0319 protein YccT OS=Salmonella enteritidis PT4 (strain P125109) GN=yccT PE=3 SV=1 YCCT_SALG2 - UPF0319 protein YccT OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yccT PE=3 SV=1 gi\|200390845, gi... - gi\|200390845\|ref\|ZP_03217456.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YCCT_SALPB - UPF0319 protein YccT OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yccT PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yccT] [protein=hypothetical protein] [protein_id=YP_005236811.1] [location=complement(1127421....	8.0E-66	[1..224]	[1..218]
gi\|168758920, gi... - gi\|189354355\|gb\|EDU72774.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188014663, gi... - gi\|188014663\|gb\|EDU52785.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189001155, gi... - gi\|189001155\|gb\|EDU70141.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168777447, gi... - gi\|187767334\|gb\|EDU31178.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189376554, gi... - gi\|189376554\|gb\|EDU94970.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168787397, gi... - gi\|189372636\|gb\|EDU91052.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... EG13722 - UPF0319 family protein / UPF0319 family protein, function unknown YCCT_ECOLI - UPF0319 protein yccT precursor - Escherichia coli YCCT_SHIFL - UPF0319 protein YccT OS=Shigella flexneri GN=yccT PE=3 SV=1 YCCT_ECOL6 - UPF0319 protein YccT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yccT PE=3 SV=... gi\|24112377, gi\|... - gi\|24112377\|ref\|NP_706887.1\| hypothetical protein SF0966 [Shigella flexneri 2a str. 301], gi\|2405124... gi\|217321737, gi... - gi\|217325516\|ref\|ZP_03441600.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YCCT_ECO27 - UPF0319 protein YccT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yccT PE=3 SV=1 YCCT_ECO45 - UPF0319 protein YccT OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yccT PE=3 SV=1 YCCT_ECO8A - UPF0319 protein YccT OS=Escherichia coli O8 (strain IAI1) GN=yccT PE=3 SV=1 YCCT_ECO7I - UPF0319 protein YccT OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yccT PE=3 SV=1 YCCT_ECO81 - UPF0319 protein YccT OS=Escherichia coli O81 (strain ED1a) GN=yccT PE=3 SV=1 YCCT_ECOLU - UPF0319 protein YccT OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yccT PE=3 SV=1 YCCT_ECOSM - UPF0319 protein YccT OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yccT PE=3 SV=1 YCCT_ECODH - UPF0319 protein YccT OS=Escherichia coli (strain K12 / DH10B) GN=yccT PE=3 SV=1 gi\|208728576, gi... - gi\|208808775\|ref\|ZP_03251112.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195935151 - gi\|195935151\|ref\|ZP_03080533.1\| hypothetical protein EscherichcoliO157_01627 [Escherichia coli O157:... gi\|208737542, gi... - gi\|208822057\|ref\|ZP_03262376.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208815872, gi... - gi\|208815872\|ref\|ZP_03257051.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... YCCT_ECOSE - UPF0319 protein YccT OS=Escherichia coli (strain SE11) GN=yccT PE=3 SV=1 YCCT_ECO5E - UPF0319 protein YccT OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yccT PE=3 SV=1 gi\|227884076, gi... - gi\|227884076\|ref\|ZP_04001881.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783882... gi\|237707051, gi... - gi\|237707051\|ref\|ZP_04537532.1\| yccT [Escherichia sp. 3_2_53FAA], gi\|226898261\|gb\|EEH84520.1\| yccT [... YCCT_ECOBW - UPF0319 protein YccT OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yccT PE=3 SV=1 gi\|251784506, gi... - gi\|251784506\|ref\|YP_002998810.1\| hypothetical protein B21_00975 [Escherichia coli BL21], gi\|24237677... gi\|253977193, gi... - gi\|254287886\|ref\|YP_003053634.1\| hypothetical protein ECD_00968 [Escherichia coli BL21(DE3)], gi\|253... gi\|254161078, gi... - gi\|254161078\|ref\|YP_003044186.1\| hypothetical protein ECB_00968 [Escherichia coli B str. REL606], gi... YCCT_ECO57 - UPF0319 protein YccT OS=Escherichia coli O157:H7 GN=yccT PE=3 SV=1 gi\|192956638, gi... - gi\|75235198\|ref\|ZP_00719440.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|254792164, gi... - gi\|254792164\|ref\|YP_003077001.1\| hypothetical protein ECSP_1070 [Escherichia coli O157:H7 str. TW143... gi\|30062503, gi\|... - gi\|30062503\|ref\|NP_836674.1\| hypothetical protein S1032 [Shigella flexneri 2a str. 2457T], gi\|300407... gi\|191172440, gi... - gi\|75240583\|ref\|ZP_00724500.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|15800823, gi\|... - gi\|15800823\|ref\|NP_286839.1\| hypothetical protein Z1315 [Escherichia coli O157:H7 EDL933], gi\|125141... gi\|194411739, gi... - gi\|75208521\|ref\|ZP_00708839.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... EG13722 - UPF0319 family protein / UPF0319 family protein, function unknown gi\|190903385, gi... - gi\|75230239\|ref\|ZP_00716736.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_SHIDS - UPF0319 protein YccT OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yccT PE=3 SV=1 YCCT_SHIBS - UPF0319 protein YccT OS=Shigella boydii serotype 4 (strain Sb227) GN=yccT PE=3 SV=1 gi\|192925667, gi... - gi\|75255124\|ref\|ZP_00727011.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_SHISS - UPF0319 protein YccT OS=Shigella sonnei (strain Ss046) GN=yccT PE=3 SV=1 YCCT_SHIB3 - UPF0319 protein YccT OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yccT PE=3 SV=1 YCCT_ECO24 - UPF0319 protein YccT OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yccT PE=3 SV=1 gi\|83584614, gi\|... - gi\|83584614\|ref\|ZP_00923283.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_ECOK1 - UPF0319 protein YccT OS=Escherichia coli O1:K1 / APEC GN=yccT PE=3 SV=1 gi\|13360508, gi\|... - gi\|15830302\|ref\|NP_309075.1\| hypothetical protein ECs1048 [Escherichia coli O157:H7 str. Sakai], gi\|... YCCT_ECOL5 - UPF0319 protein YccT OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yccT PE=3 SV=1 YCCT_ECOL6 - UPF0319 protein yccT OS=Escherichia coli O6 GN=yccT PE=3 SV=1 gi\|89107814, gi\|... - gi\|89107814\|ref\|AP_001594.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... YCCT_ECOUT - UPF0319 protein YccT OS=Escherichia coli (strain UTI89 / UPEC) GN=yccT PE=3 SV=1 sp\|B7UN43\|YCCT_ECO27 - UPF0319 protein yccT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yccT PE=3 SV=1	2.0E-65	[1..224]	[1..218]
YCCT_SHIF8 - UPF0319 protein YccT OS=Shigella flexneri serotype 5b (strain 8401) GN=yccT PE=3 SV=1	3.0E-65	[1..224]	[1..218]
YCCT_ECO55 - UPF0319 protein YccT OS=Escherichia coli (strain 55989 / EAEC) GN=yccT PE=3 SV=1 gi\|75513417, gi\|... - gi\|75513417\|ref\|ZP_00735821.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_ECOHS - UPF0319 protein YccT OS=Escherichia coli O9:H4 (strain HS) GN=yccT PE=3 SV=1 gi\|124529156, gi... - gi\|124529156\|ref\|ZP_01700266.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500111\|gb... YCCT_ECOLC - UPF0319 protein YccT OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yccT PE=3 SV=1	5.0E-65	[1..224]	[1..218]
gi\|83570628, gi\|... - gi\|83570628\|ref\|ZP_00922072.1\| COG3110: Uncharacterized protein conserved in bacteria [Shigella dyse...	1.0E-64	[1..224]	[1..218]
YCCT_SALPA - UPF0319 protein YccT OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yccT PE=3 SV=1 YCCT_SALPA - UPF0319 protein yccT OS=Salmonella paratyphi A GN=yccT PE=3 SV=1 YCCT_SALPK - UPF0319 protein YccT OS=Salmonella paratyphi A (strain AKU_12601) GN=yccT PE=3 SV=1	2.0E-64	[1..224]	[1..218]
gi\|238720360, gi... - gi\|77963136\|ref\|ZP_00826949.1\| COG3110: Uncharacterized protein conserved in bacteria [Yersinia moll...	8.0E-63	[1..225]	[1..226]
gi\|77956171, gi\|... - gi\|77956171\|ref\|ZP_00820300.1\| COG3110: Uncharacterized protein conserved in bacteria [Yersinia berc...	2.0E-61	[1..224]	[1..225]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLGLVAGML AVCFSFSSVA MTLKLTPEID LLVVDGKNMS GSLLKGADSL ELNSGMHQIL  60
   61 FKVIKPLPTD PLVLYSSPPL IVVFNAHNTR SVAIKLPVIN TLRDGHQFSK NPLYQLIGDN 120
  121 GHPLSVRHDV L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.666	N/A	N/A	d.110.1	Profilin (actin-binding protein)
View	Download	0.649	N/A	N/A	d.82.2	Frataxin-like
View	Download	0.614	N/A	N/A	b.61.3	D-aminopeptidase, middle and C-terminal domains
View	Download	0.575	N/A	N/A	b.55.1	PH domain-like
View	Download	0.515	N/A	N/A	d.58.35	Pseudouridine synthase

Predicted Domain #2

Region A:
Residues: [132-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQDHLNNSTT LETVMAAYNV GKYNASVPAF AAIPPSPVSA VPGTTIPVAG VNTPHKTASL  60
   61 QGENVTEQML QYWFLQANPE TQKRFLIWAK KQPIH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.412	N/A	N/A	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain
View	Download	0.369	N/A	N/A	d.42.1	POZ domain
View	Download	0.360	N/A	N/A	a.133.1	Phospholipase A2, PLA2
View	Download	0.327	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.317	N/A	N/A	a.59.1	PAH2 domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits