YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218889714, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218889714, gi....

Description	E-value	Query Range	Subject Range
gi\|150959030, gi... - gi\|94417062\|ref\|ZP_01296884.1\| hypothetical protein PaerP_01001258 [Pseudomonas aeruginosa PA7], gi\|...	177.0	[0..1]	[118..1]
gi\|49074330 - gi\|49074330\|gb\|AAT49396.1\| PA4005 [synthetic construct]	177.0	[0..1]	[118..1]
gi\|23104125, gi\|... - gi\|67154138\|ref\|ZP_00415883.1\| Iojap-related protein [Azotobacter vinelandii AvOP], ref\|ZP_00090593.... gi\|67088271, gi\|... - gi\|67154138\|ref\|ZP_00415883.1\| Iojap-related protein [Azotobacter vinelandii AvOP], gi\|67088271\|gb\|E...	163.0	[0..1]	[117..1]
gi\|83746485, gi\|... - gi\|83746485\|ref\|ZP_00943536.1\| iojap protein family [Ralstonia solanacearum UW551], gi\|83726816\|gb\|E...	159.0	[0..1]	[108..32]
gi\|71736823, gi\|... - gi\|71736823\|ref\|YP_276525.1\| iojap domain-containing protein [Pseudomonas syringae pv. phaseolicola ... gi\|237798406 - gi\|237798406\|ref\|ZP_04586867.1\| iojap domain-containing protein [Pseudomonas syringae pv. oryzae str... gi\|23470785, gi\|... - gi\|66047594\|ref\|YP_237435.1\| Iojap-related protein [Pseudomonas syringae pv. syringae B728a], gi\|632...	157.0	[0..1]	[116..6]
gi\|67661967, gi\|... - gi\|67661967\|ref\|ZP_00459258.1\| Iojap-related protein [Burkholderia cenocepacia HI2424], gi\|67104552\|... gi\|67658108, gi\|... - gi\|67658108\|ref\|ZP_00455482.1\| Iojap-related protein [Burkholderia cenocepacia AU 1054], gi\|67094243...	157.0	[0..1]	[108..31]
gi\|83636528, gi\|... - gi\|83648485\|ref\|YP_436920.1\| hypothetical protein HCH_05845 [Hahella chejuensis KCTC 2396], gi\|83636...	156.0	[0..1]	[108..1]
gi\|11360829 - pir\|\|A82591 conserved hypothetical protein XF2180 [imported] - Xylella fastidiosa (strain 9a5c) gi\|9107320, gi\|1... - gi\|9107320\|gb\|AAF84979.1\|AE004031_11 conserved hypothetical protein [Xylella fastidiosa 9a5c], gi\|15...	155.0	[0..6]	[109..33]
gi\|28855195, gi\|... - gi\|28871942\|ref\|NP_794561.1\| iojap-related protein [Pseudomonas syringae pv. tomato str. DC3000], gi... gi\|213968038, gi... - gi\|213968038\|ref\|ZP_03396184.1\| iojap-related protein [Pseudomonas syringae pv. tomato T1], gi\|21392... tr\|Q87VV8\|Q87VV8... - Ribosomal silencing factor RsfS OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=rsfS PE=3 SV=1	154.0	[0..1]	[116..1]
gi\|71276305, gi\|... - gi\|71276305\|ref\|ZP_00652583.1\| Iojap-related protein [Xylella fastidiosa Dixon], gi\|71162913\|gb\|EAO1... gi\|170730506, gi... - gi\|170730506\|ref\|YP_001775939.1\| hypothetical protein Xfasm12_1380 [Xylella fastidiosa M12], gi\|1679... gi\|71729929, gi\|... - gi\|71900281\|ref\|ZP_00682417.1\| Iojap-related protein [Xylella fastidiosa Ann-1], gi\|71729929\|gb\|EAO3...	154.0	[0..6]	[109..33]

Back

Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTEQLVQVA IDALEDLKAQ DIVTLDVRDK TSVTDYMVIA CGSSSRQVKS LADNVLTKAK  60
   61 ENGVKPLGSE GLESGEWALL DLGDVVVHVM LPATRQFYDL ERLWQGAEQS RAQHQPEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2o5aA
Description:	No description for 2o5aA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits