YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208737599, gi...
Organism:	Escherichia coli O157:H7 str. EC4042
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208737599, gi....

Description	E-value	Query Range	Subject Range
gi\|16760024 - gi\|16760024\|ref\|NP_455641.1\| hypothetical protein STY1184 [Salmonella enterica subsp. enterica serov... gi\|25348556, gi\|... - gi\|25348556\|pir\|\|AD0636 conserved hypothetical protein STY1184 [imported] - Salmonella enterica subs... gi\|29142205, gi\|... - gi\|29142205\|ref\|NP_805547.1\| hypothetical protein t1773 [Salmonella enterica subsp. enterica serovar...	224.0	[0..1]	[177..8]
lcl\|NC_016856.1_... - [gene=STM14_1313] [protein=hypothetical protein] [protein_id=YP_005236897.1] [location=1191175..1191... gi\|213855353 - gi\|213855353\|ref\|ZP_03383593.1\| hypothetical protein SentesT_15332 [Salmonella enterica subsp. enter... gi\|213648866 - gi\|213648866\|ref\|ZP_03378919.1\| hypothetical protein SentesTy_17238 [Salmonella enterica subsp. ente... gi\|214002375 - gi\|214002375\|ref\|ZP_03413110.1\| hypothetical protein Salmonellentericaenterica_19146 [Salmonella ent... gi\|213052365 - gi\|213052365\|ref\|ZP_03345243.1\| hypothetical protein Salmoneentericaenterica_05196 [Salmonella enter... YMDB_SALTY - O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=y... gi\|213024676 - gi\|213024676\|ref\|ZP_03339123.1\| hypothetical protein Salmonelentericaenterica_20201 [Salmonella ente... YMDB_SALTY - O-acetyl-ADP-ribose deacetylase OS=Salmonella typhimurium GN=ymdB PE=3 SV=1 gi\|213621336 - gi\|213621336\|ref\|ZP_03374119.1\| hypothetical protein SentesTyp_29012 [Salmonella enterica subsp. ent... YMDB_SALTI - O-acetyl-ADP-ribose deacetylase OS=Salmonella typhi GN=ymdB PE=3 SV=1 gi\|213427732 - gi\|213427732\|ref\|ZP_03360482.1\| hypothetical protein SentesTyphi_20380 [Salmonella enterica subsp. e... gi\|197939883, gi... - gi\|198245367\|ref\|YP_002215991.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Dublin st... gi\|197244218, gi... - gi\|197265963\|ref\|ZP_03166037.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Saintpaul ... YMDB_SALTY - UPF0189 protein ymdB OS=Salmonella typhimurium GN=ymdB PE=3 SV=1 gi\|207857345, gi... - gi\|207857345\|ref\|YP_002243996.1\| hypothetical protein SEN1901 [Salmonella enterica subsp. enterica s... YMDB_SALTI - UPF0189 protein ymdB OS=Salmonella typhi GN=ymdB PE=3 SV=1 gi\|199602223, gi... - gi\|200389778\|ref\|ZP_03216389.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Virchow st... gi\|205331947, gi... - gi\|205331947\|gb\|EDZ18711.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|167994006, gi... - gi\|205328030\|gb\|EDZ14794.1\| protein YmdB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|194469514, gi... - gi\|194469514\|ref\|ZP_03075498.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|168467092, gi... - gi\|195630410\|gb\|EDX49036.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|167553071, gi... - gi\|205322423\|gb\|EDZ10262.1\| protein YmdB [Salmonella enterica subsp. enterica serovar Saintpaul str....	223.0	[0..1]	[177..1]
Y4133_LEPIN - UPF0189 protein LA_4133 OS=Leptospira interrogans GN=LA_4133 PE=3 SV=1 Y4133_LEPIN - Macro domain-containing protein LA_4133 OS=Leptospira interrogans serogroup Icterohaemorrhagiae sero...	223.0	[0..1]	[172..1]
gi\|76883617, gi\|... - gi\|77165303\|ref\|YP_343828.1\| Appr-1-p processing [Nitrosococcus oceani ATCC 19707], gi\|76883617\|gb\|A... gi\|207090470 - gi\|207090470\|gb\|EDZ67741.1\| Appr-1-p processing enzyme family protein [Nitrosococcus oceani AFC27] gi\|254434137, gi... - gi\|254434137\|ref\|ZP_05047645.1\| Appr-1-p processing enzyme family protein [Nitrosococcus oceani AFC2...	223.0	[0..1]	[175..1]
gi\|56413865, gi\|... - gi\|56413865\|ref\|YP_150940.1\| hypothetical protein SPA1704 [Salmonella enterica subsp. enterica serov... gi\|197362788, gi... - gi\|197362788\|ref\|YP_002142425.1\| hypothetical protein SSPA1585 [Salmonella enterica subsp. enterica ...	223.0	[0..1]	[177..1]
Y3295_LEPIC - UPF0189 protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhagen... Y3295_LEPIC - Macro domain-containing protein LIC_13295 OS=Leptospira interrogans serogroup Icterohaemorrhagiae se...	223.0	[0..1]	[172..1]
gi\|188487977, gi... - gi\|75513490\|ref\|ZP_00735894.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of... gi\|157066250, gi... - gi\|75195231\|ref\|ZP_00705301.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of...	220.0	[0..1]	[177..1]
gi\|47169184 - gi\|47169184\|pdb\|1SPV\|A Chain A, Crystal Structure Of The Putative Phosphatase Of Escherichia Coli, N...	219.0	[0..1]	[177..1]
gi\|30062570, gi\|... - gi\|30062570\|ref\|NP_836741.1\| hypothetical protein S1115 [Shigella flexneri 2a str. 2457T], gi\|300408... gi\|24051327, gi\|... - gi\|24112446\|ref\|NP_706956.1\| hypothetical protein SF1041 [Shigella flexneri 2a str. 301], gi\|2405132... YMDB_SHIF8 - O-acetyl-ADP-ribose deacetylase OS=Shigella flexneri serotype 5b (strain 8401) GN=ymdB PE=3 SV=1	218.0	[0..1]	[177..1]
gi\|187427697, gi... - gi\|75175829\|ref\|ZP_00696024.1\| COG2110: Predicted phosphatase homologous to the C-terminal domain of...	218.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTRIHVVQG DITKLAVDVI VNAANPSLMG GGGVDGAIHR AAGPALLDAC LKVRQQQGDC  60
   61 PTGHAVITLA GDLPAKAVVH TVGPVWRGGE QNEDQLLQDA YLNSLRLVAA NSYTSVAFPA 120
  121 ISTGVYGYPR AAAAEIAVKT VSEFITRHAL PEQVYFVCYD EENAHLYERL LTQQGDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	1spvA
Description:	Crystal Structure of the Putative Phosphatase of Escherichia coli, Northeast Structural Genomoics Target ER58
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.742962788585077	bayes_pls_golite062009
protein binding	0.0562678909924789	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: