YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166214029, gi...
Organism:	Yersinia pestis biovar Antiqua str. B42003004
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166214029, gi....

Description	E-value	Query Range	Subject Range
gi\|83585391 - gi\|83585391\|ref\|ZP_00924037.1\| hypothetical protein Ecol1_01003369 [Escherichia coli 101-1]	9.0E-22	[1..87]	[18..104]
gi\|226840022, gi... - gi\|254038398\|ref\|ZP_04872456.1\| YcfR [Escherichia sp. 1_1_43], gi\|226840022\|gb\|EEH72043.1\| YcfR [Esc... gi\|237706015, gi... - gi\|237706015\|ref\|ZP_04536496.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|606177\|gb\|AAA... - ORF_o104 [Escherichia coli] gi\|227835349, gi... - gi\|227887953\|ref\|ZP_04005758.1\| protein YhcN [Escherichia coli 83972], gi\|227835349\|gb\|EEJ45815.1\| p... gi\|26249819, gi\|... - gi\|26249819\|ref\|NP_755859.1\| hypothetical protein c3993 [Escherichia coli CFT073], gi\|26110247\|gb\|AA... gi\|91212658, gi\|... - gi\|91212658\|ref\|YP_542644.1\| hypothetical protein UTI89_C3669 [Escherichia coli UTI89], gi\|91074232\|... gi\|606177, gi\|20... - pir\|\|H65115 hypothetical protein b3238 - Escherichia coli (strain K-12), gi\|606177\|gb\|AAA58040.1\| OR... gi\|13363584, gi\|... - gi\|15833365\|ref\|NP_312138.1\| hypothetical protein ECs4111 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|16131128, gi\|... - gb\|AAC76270.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|13363584, gi\|... - gi\|15833365\|ref\|NP_312138.1\| hypothetical protein ECs4111 [Escherichia coli O157:H7], gi\|13363584\|db... gi\|12517859, gi\|... - gi\|15803772\|ref\|NP_289806.1\| hypothetical protein Z4597 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|168769094, gi... - gi\|189361759\|gb\|EDU80178.1\| protein YcfR [Escherichia coli O157:H7 str. EC4486], gi\|168769094\|ref\|ZP... gi\|168777633, gi... - gi\|187767176\|gb\|EDU31020.1\| protein YcfR [Escherichia coli O157:H7 str. EC4196], gi\|168777633\|ref\|ZP... gi\|195939436 - gi\|195939436\|ref\|ZP_03084818.1\| hypothetical protein EscherichcoliO157_23998 [Escherichia coli O157:... gi\|209157344, gi... - gi\|209395944\|ref\|YP_002272701.1\| protein YcfR [Escherichia coli O157:H7 str. EC4115], gi\|209157344\|g... gi\|75176076 - gi\|75176076\|ref\|ZP_00696244.1\| hypothetical protein SboyB_01003901 [Shigella boydii BS512] gi\|115514646, gi... - gi\|117625522\|ref\|YP_858845.1\| hypothetical protein APECO1_3206 [Escherichia coli APEC O1], gi\|115514... gi\|75511866 - gi\|75511866\|ref\|ZP_00734478.1\| hypothetical protein Ecol5_01003853 [Escherichia coli 53638] gi\|75256608 - gi\|75256608\|ref\|ZP_00728238.1\| hypothetical protein EcolE2_01003509 [Escherichia coli E22] gi\|75237907 - gi\|75237907\|ref\|ZP_00721918.1\| hypothetical protein EcolF_01003713 [Escherichia coli F11] gi\|75234854 - gi\|75234854\|ref\|ZP_00719145.1\| hypothetical protein EcolE1_01003270 [Escherichia coli E110019] gi\|75228636 - gi\|75228636\|ref\|ZP_00715261.1\| hypothetical protein EcolB7_01003067 [Escherichia coli B7A] gi\|75209675 - gi\|75209675\|ref\|ZP_00709887.1\| hypothetical protein EcolB_01003199 [Escherichia coli B171] gi\|75197181 - gi\|75197181\|ref\|ZP_00707251.1\| hypothetical protein EcolH_01002995 [Escherichia coli HS] gi\|75188038 - gi\|75188038\|ref\|ZP_00701305.1\| hypothetical protein EcolE_01001280 [Escherichia coli E24377A]	4.0E-21	[1..87]	[18..104]
gi\|85675042, gi\|... - gi\|89108445\|ref\|AP_002225.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown gi\|169889103, gi... - gi\|170081268\|ref\|YP_001730588.1\| hypothetical protein ECDH10B_1737 [Escherichia coli str. K-12 subst... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown YDGH_ECOLI - Protein ydgH precursor - Escherichia coli gi\|238900820, gi... - gi\|238900820\|ref\|YP_002926616.1\| hypothetical protein BWG_1419 [Escherichia coli BW2952], gi\|2388629...	4.0E-21	[1..87]	[1..90]
gi\|74313769, gi\|... - gi\|74313769\|ref\|YP_312188.1\| hypothetical protein SSON_3380 [Shigella sonnei Ss046], gi\|73857246\|gb\|...	4.0E-21	[1..87]	[18..104]
gi\|110616648, gi... - gi\|110807100\|ref\|YP_690620.1\| hypothetical protein SFV_3265 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114525, gi\|... - gi\|24114525\|ref\|NP_709035.1\| hypothetical protein SF3278 [Shigella flexneri 2a str. 301], gi\|2405371... gi\|30042829, gi\|... - gi\|30064570\|ref\|NP_838741.1\| hypothetical protein S3493 [Shigella flexneri 2a str. 2457T], gi\|300428...	6.0E-21	[1..87]	[18..104]
gi\|82545533, gi\|... - gi\|82545533\|ref\|YP_409480.1\| hypothetical protein SBO_3151 [Shigella boydii Sb227], gi\|81246944\|gb\|A...	6.0E-21	[1..87]	[18..104]
gi\|194432011, gi... - gi\|83570994\|ref\|ZP_00922436.1\| hypothetical protein Sdys1_01000824 [Shigella dysenteriae 1012], gi\|1...	9.0E-21	[1..87]	[1..90]
gi\|193070223, gi... - gi\|75234917\|ref\|ZP_00719196.1\| hypothetical protein EcolE1_01003201 [Escherichia coli E110019], gi\|1...	1.0E-20	[1..87]	[1..90]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIKTTVATM SILSALSFGV FAADSINENQ ATQLQPMGTI TVSGLNGAPS DIRQALSDKA  60
   61 DTVGAKAYKV IEVRSENNWH ATANIYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.39794
Match:	2nocA
Description:	No description for 2nocA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits