YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189000486, gi...
Organism:	Escherichia coli O157:H7 str. EC4076
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189000486, gi....

Description	E-value	Query Range	Subject Range
gi\|56383150, gi\|... - gi\|56479599\|ref\|NP_706044.2\| cell division protein FtsW [Shigella flexneri 2a str. 301], gi\|56383150... gi\|110613701, gi... - gi\|110804153\|ref\|YP_687673.1\| cell division protein FtsW [Shigella flexneri 5 str. 8401], gi\|1106137... gi\|30039898, gi\|... - gi\|30061656\|ref\|NP_835827.1\| cell division protein FtsW [Shigella flexneri 2a str. 2457T], gi\|300398...	389.0	[0..1]	[414..1]
gi\|91070727, gi\|... - gi\|91209153\|ref\|YP_539139.1\| cell division protein FtsW [Escherichia coli UTI89], gi\|91070727\|gb\|ABE... gi\|26246022, gi\|... - gi\|26246022\|ref\|NP_752061.1\| cell division protein FtsW [Escherichia coli CFT073], gi\|26106419\|gb\|AA...	389.0	[0..1]	[414..2]
gi\|62178694, gi\|... - gi\|62178694\|ref\|YP_215111.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar... gi\|197291796, gi... - gi\|197291796\|gb\|EDY31146.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|205334918, gi... - gi\|205334918\|gb\|EDZ21682.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|205331453, gi... - gi\|205331453\|gb\|EDZ18217.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|161361835, gi... - gi\|161612471\|ref\|YP_001586436.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|200387891, gi... - gi\|200387891\|ref\|ZP_03214503.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|197938335, gi... - gi\|198243819\|ref\|YP_002214079.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|197240123, gi... - gi\|197261868\|ref\|ZP_03161942.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|197248187, gi... - gi\|197248187\|ref\|YP_002145113.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|213999322 - gi\|213999322\|ref\|ZP_03410057.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|213579883 - gi\|213579883\|ref\|ZP_03361709.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|205342503, gi... - gi\|205342503\|gb\|EDZ29267.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|195632809, gi... - gi\|195632809\|gb\|EDX51263.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|205348663, gi... - gi\|205348663\|gb\|EDZ35294.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|205337406, gi... - gi\|205337406\|gb\|EDZ24170.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|194711192, gi... - gi\|194735690\|ref\|YP_002113145.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|194469496, gi... - gi\|194469496\|ref\|ZP_03075480.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|194409971, gi... - gi\|194451667\|ref\|YP_002044097.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|194404690, gi... - gi\|194446027\|ref\|YP_002039359.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|29136296, gi\|... - gi\|29140672\|ref\|NP_804014.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar... gi\|16759122 - gi\|16759122\|ref\|NP_454739.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar... gi\|16501412, gi\|... - gi\|25301518\|pir\|\|AD0518 cell division protein FtsW [imported] - Salmonella enterica subsp. enterica ... gi\|16418626, gi\|... - gi\|16763517\|ref\|NP_459132.1\| cell division protein FtsW [Salmonella typhimurium LT2], gi\|16418626\|gb... lcl\|NC_016856.1_... - [gene=ftsW] [protein=cell division protein FtsW] [protein_id=YP_005235786.1] [location=149428..15067... gi\|238911184 - gi\|238911184\|ref\|ZP_04655021.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero...	386.0	[0..1]	[414..1]
gi\|56126656, gi\|... - gi\|56412399\|ref\|YP_149474.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar...	385.0	[0..1]	[414..1]
gi\|75175646, gi\|... - gi\|75175646\|ref\|ZP_00695854.1\| COG0772: Bacterial cell division membrane protein [Shigella boydii BS... gi\|81244104, gi\|... - gi\|82542693\|ref\|YP_406640.1\| cell division protein FtsW [Shigella boydii Sb227], gi\|81244104\|gb\|ABB6...	382.0	[0..1]	[414..1]
FTSW_PSEA6 - Putative lipid II flippase FtsW OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=ftsW ...	365.0	[0..18]	[414..1]
gi\|88774162, gi\|... - gi\|88794396\|ref\|ZP_01110104.1\| cell division protein FtsW [Alteromonas macleodii 'Deep ecotype'], gi...	357.0	[0..44]	[412..26]
FTSW_IDILO - Putative lipid II flippase FtsW OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) G...	349.0	[0..35]	[413..29]
gi\|113887337, gi... - gi\|78691046\|ref\|ZP_00855678.1\| cell division protein FtsW [Shewanella sp. MR-7], gi\|78509570\|gb\|EAP2... gi\|117614508, gi... - gi\|78686899\|ref\|ZP_00851660.1\| cell division protein FtsW [Shewanella sp. ANA-3], gi\|78505409\|gb\|EAP...	348.0	[0..15]	[410..7]
gi\|113971899, gi... - gi\|82495629\|ref\|ZP_00881203.1\| cell division protein FtsW [Shewanella sp. MR-4], gi\|82406221\|gb\|EAP4...	347.0	[0..15]	[410..7]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSLPRLKM PRLPGFSILV WISTALKGWV MGSREKDTDS LIMYDRTLLW LTFGLAAIGF  60
   61 IMVTSASMPI GQRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNDPFFFAKR DGVYLILAFI LAIITLRLPM EFWQRYSATM LLGSIILLMI VLVVGSSVKG  60
   61 ASRWIDLGLL RIQPAELTKL SLFCYIANYL VRKGDEVRNN LRGFLKPMGV ILVLAVLLLA 120
  121 QPDLGTVVVL FVTTLAMLFL AGAKLWQFIA I

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [226-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGMGISAVVL LILAEPYRIR RVTAFWNPWE DPFGSGYQLT QSLMAFGRGE LWGQGLGNSV  60
   61 QKLEYLPEAH TDFIFAIIGE ELGYVGVVLA LLMVFFVAFR AMSIGRK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [333-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALEIDHRFSG FLACSIGIWF SFQALVNVGA AAGMLPTKGL TLPLISYGGS SLLIMSTAIM  60
   61 MLLRIDYETR LEKAQAFVRG SR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits