YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218555382, gi...
Organism:	Escherichia coli IAI1
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218555382, gi....

Description	E-value	Query Range	Subject Range
gi\|110806769, gi... - gi\|110806769\|ref\|YP_690289.1\| hypothetical protein SFV_2911 [Shigella flexneri 5 str. 8401], gi\|1106...	110.0	[0..1]	[72..1]
gi\|238909785 - gi\|238909785\|ref\|ZP_04653622.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar Te... lcl\|NC_016856.1_... - [gene=ygdR] [protein=putative peptide transport protein] [protein_id=YP_005239135.1] [location=31849... gi\|16421557, gi\|... - gi\|16766309\|ref\|NP_461924.1\| putative peptide transport protein [Salmonella typhimurium LT2], gi\|164... gi\|168261838, gi... - gi\|205349040\|gb\|EDZ35671.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|195633569, gi... - gi\|195633569\|gb\|EDX51983.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|197290796, gi... - gi\|197290796\|gb\|EDY30150.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|205338169, gi... - gi\|205338169\|gb\|EDZ24933.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|167993508, gi... - gi\|205328476\|gb\|EDZ15240.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|168231106, gi... - gi\|205334525\|gb\|EDZ21289.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|161365309, gi... - gi\|161615945\|ref\|YP_001589910.1\| hypothetical protein SPAB_03742 [Salmonella enterica subsp. enteric... gi\|167550116, gi... - gi\|205324706\|gb\|EDZ12545.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|207858270, gi... - gi\|207858270\|ref\|YP_002244921.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar E... gi\|224469323, gi... - gi\|224584796\|ref\|YP_002638594.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|204928254, gi... - gi\|204928254\|ref\|ZP_03219454.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|205273728, gi... - gi\|205353947\|ref\|YP_002227748.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar G... gi\|198242598, gi... - gi\|198242598\|ref\|YP_002216981.1\| hypothetical protein SeD_A3335 [Salmonella enterica subsp. enterica... gi\|200387062, gi... - gi\|200387062\|ref\|ZP_03213674.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197240057, gi... - gi\|197261802\|ref\|ZP_03161876.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197095360, gi... - gi\|197363883\|ref\|YP_002143520.1\| possible lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|194738056, gi... - gi\|194738056\|ref\|YP_002115958.1\| hypothetical protein SeSA_A3172 [Salmonella enterica subsp. enteric... gi\|197211878, gi... - gi\|197248175\|ref\|YP_002147916.1\| hypothetical protein SeAg_B3154 [Salmonella enterica subsp. enteric... gi\|62129149, gi\|... - gi\|62181516\|ref\|YP_217933.1\| POT family peptide transport protein [Salmonella enterica subsp. enteri... gi\|194449686, gi... - gi\|194449686\|ref\|YP_002046977.1\| hypothetical protein SeHA_C3220 [Salmonella enterica subsp. enteric... gi\|194456262, gi... - gi\|194469898\|ref\|ZP_03075882.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|205342922, gi... - gi\|205342922\|gb\|EDZ29686.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|56414954, gi\|... - gi\|56414954\|ref\|YP_152029.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Paratyphi A st... gi\|194401264, gi... - gi\|194442601\|ref\|YP_002042257.1\| hypothetical protein SNSL254_A3235 [Salmonella enterica subsp. ente...	110.0	[0..1]	[72..1]
gi\|29138902, gi\|... - gi\|29143268\|ref\|NP_806610.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2... gi\|16761784 - gi\|16761784\|ref\|NP_457401.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. CT1... gi\|25513211, gi\|... - gi\|25513211\|pir\|\|AH0866 probable lipoprotein [imported] - Salmonella enterica subsp. enterica serova... gi\|213976723 - gi\|213976723\|ref\|ZP_03403982.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|214000415 - gi\|214000415\|ref\|ZP_03411150.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213581923 - gi\|213581923\|ref\|ZP_03363749.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213620567 - gi\|213620567\|ref\|ZP_03373350.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213650274 - gi\|213650274\|ref\|ZP_03380327.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213861492 - gi\|213861492\|ref\|ZP_03385962.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213023727 - gi\|213023727\|ref\|ZP_03338174.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213162079 - gi\|213162079\|ref\|ZP_03347789.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213420644 - gi\|213420644\|ref\|ZP_03353710.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213428462 - gi\|213428462\|ref\|ZP_03361212.1\| lipoprotein [Salmonella enterica subsp. enterica serovar Typhi str. ...	107.0	[0..1]	[72..1]
gi\|49610479, gi\|... - gi\|50119953\|ref\|YP_049120.1\| putative lipoprotein [Pectobacterium atrosepticum SCRI1043], gi\|4961047...	102.0	[0..1]	[71..1]
gi\|77972694 - gi\|77972694\|ref\|ZP_00828253.1\| hypothetical protein YfreA_01003476 [Yersinia frederiksenii ATCC 3364...	102.0	[0..1]	[71..1]
gi\|77977763, gi\|... - gi\|77977763\|ref\|ZP_00833204.1\| hypothetical protein YintA_01002486 [Yersinia intermedia ATCC 29909],...	100.0	[0..1]	[71..1]
gi\|110344542, gi... - gi\|110642950\|ref\|YP_670680.1\| putative lipoprotein [Escherichia coli 536], gi\|110344542\|gb\|ABG70779.... gi\|85675628, gi\|... - gi\|89109595\|ref\|AP_003375.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13081 - DUF903 family verified lipoprotein / DUF903 family verified lipoprotein, function unknown gi\|188495026, gi... - gi\|188495026\|ref\|ZP_03002296.1\| putative lipoprotein [Escherichia coli 53638], gi\|188490225\|gb\|EDU65... gi\|188025103, gi... - gi\|188025103\|ref\|ZP_02776048.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|1880... gi\|187776434, gi... - gi\|187776434\|ref\|ZP_02802675.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|1877... gi\|187428975, gi... - gi\|187731983\|ref\|YP_001881452.1\| putative lipoprotein [Shigella boydii CDC 3083-94], gi\|187428975\|gb... gi\|189365391, gi... - gi\|189404466\|ref\|ZP_02789647.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|1893... gi\|189402896, gi... - gi\|189402896\|ref\|ZP_02791789.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|1893... gi\|189402553, gi... - gi\|189402553\|ref\|ZP_02783201.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|1893... gi\|189003436, gi... - gi\|189009969\|ref\|ZP_02803810.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|1890... gi\|170520088, gi... - gi\|170682370\|ref\|YP_001744974.1\| putative lipoprotein [Escherichia coli SMS-3-5], gi\|170520088\|gb\|AC... gi\|170082380, gi... - gi\|170082380\|ref\|YP_001731700.1\| hypothetical protein ECDH10B_2979 [Escherichia coli str. K-12 subst... gi\|157067943, gi... - gi\|157162263\|ref\|YP_001459581.1\| putative lipoprotein [Escherichia coli HS], gi\|157067943\|gb\|ABV0719... gi\|170018945, gi... - gi\|170018945\|ref\|YP_001723899.1\| hypothetical protein EcolC_0903 [Escherichia coli ATCC 8739], gi\|16... gi\|157157648, gi... - gi\|157157648\|ref\|YP_001464133.1\| putative lipoprotein [Escherichia coli E24377A], gi\|157079678\|gb\|AB... gi\|209913519, gi... - gi\|209920260\|ref\|YP_002294344.1\| hypothetical protein ECSE_3069 [Escherichia coli SE11], gi\|20991351... gi\|209400704, gi... - gi\|209400704\|ref\|YP_002272275.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208738376, gi... - gi\|208818253\|ref\|ZP_03258573.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208812391, gi... - gi\|208812391\|ref\|ZP_03253720.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|218362128, gi... - gi\|218555360\|ref\|YP_002388273.1\| hypothetical protein ECIAI1_2919 [Escherichia coli IAI1], gi\|218362... gi\|218355220, gi... - gi\|218547679\|ref\|YP_002381470.1\| hypothetical protein EFER_0258 [Escherichia fergusonii ATCC 35469],... gi\|217327605, gi... - gi\|217327605\|ref\|ZP_03443688.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|215266198, gi... - gi\|215488126\|ref\|YP_002330557.1\| hypothetical protein E2348C_3076 [Escherichia coli O127:H6 str. E23... EG13081 - DUF903 family verified lipoprotein / DUF903 family verified lipoprotein, function unknown gi\|193065103, gi... - gi\|193065103\|ref\|ZP_03046177.1\| putative lipoprotein [Escherichia coli E22], gi\|192927234\|gb\|EDV8185... gi\|190908457, gi... - gi\|191171157\|ref\|ZP_03032707.1\| putative lipoprotein [Escherichia coli F11], gi\|190908457\|gb\|EDV6804... gi\|189406159, gi... - gi\|189406159\|ref\|ZP_02826680.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|18937... gi\|251786088, gi... - gi\|251786088\|ref\|YP_003000392.1\| hypothetical protein B21_02621 [Escherichia coli BL21], gi\|24237836... gi\|189372182, gi... - gi\|189405064\|ref\|ZP_02813080.2\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|18937... gi\|238862915, gi... - gi\|238901947\|ref\|YP_002927743.1\| hypothetical protein BWG_2547 [Escherichia coli BW2952], gi\|2388629... gi\|208727097, gi... - gi\|208807296\|ref\|ZP_03249633.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|253974641, gi... - gi\|254162740\|ref\|YP_003045848.1\| hypothetical protein ECB_02660 [Escherichia coli B str. REL606], gi... gi\|195936413 - gi\|195936413\|ref\|ZP_03081795.1\| hypothetical protein EscherichcoliO157_08107 [Escherichia coli O157:... gi\|254289499, gi... - gi\|254289499\|ref\|YP_003055247.1\| hypothetical protein ECD_02660 [Escherichia coli BL21(DE3)], gi\|253... gi\|194421195, gi... - gi\|194439858\|ref\|ZP_03071922.1\| putative lipoprotein [Escherichia coli 101-1], gi\|194421195\|gb\|EDX37... gi\|194426465, gi... - gi\|194426465\|ref\|ZP_03059020.1\| putative lipoprotein [Escherichia coli B171], gi\|194415773\|gb\|EDX320... gi\|254594150, gi... - gi\|254794750\|ref\|YP_003079587.1\| hypothetical protein ECSP_3761 [Escherichia coli O157:H7 str. TW143... YGDI_ECOL6 - Uncharacterized lipoprotein ygdI OS=Escherichia coli O6 GN=ygdI PE=4 SV=1 YGDI_ECOL6 - Uncharacterized lipoprotein YgdI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=y... YGDI_ECOLI - Hypothetical lipoprotein ygdI precursor - Escherichia coli gi\|218701526, gi... - gi\|218701526\|ref\|YP_002409155.1\| hypothetical protein ECIAI39_3231 [Escherichia coli IAI39], gi\|2183... gi\|218696408, gi... - gi\|218696408\|ref\|YP_002404075.1\| hypothetical protein EC55989_3088 [Escherichia coli 55989], gi\|2183... gi\|218428497, gi... - gi\|218690933\|ref\|YP_002399145.1\| hypothetical protein ECED1_3263 [Escherichia coli ED1a], gi\|2184284... gi\|218366566, gi... - gi\|218559797\|ref\|YP_002392710.1\| hypothetical protein ECS88_3078 [Escherichia coli S88], gi\|21836656... gi\|218433403, gi... - gi\|218706306\|ref\|YP_002413825.1\| hypothetical protein ECUMN_3139 [Escherichia coli UMN026], gi\|21843...	100.0	[0..1]	[71..1]
gi\|75175507 - gi\|75175507\|ref\|ZP_00695725.1\| hypothetical protein SboyB_01004460 [Shigella boydii BS512] gi\|75187537 - gi\|75187537\|ref\|ZP_00700804.1\| hypothetical protein EcolE_01000768 [Escherichia coli E24377A] gi\|83584769 - gi\|83584769\|ref\|ZP_00923431.1\| hypothetical protein Ecol1_01004001 [Escherichia coli 101-1] gi\|227888351, gi... - gi\|227888351\|ref\|ZP_04006156.1\| lipoprotein [Escherichia coli 83972], gi\|227834620\|gb\|EEJ45086.1\| li... gi\|226899599, gi... - gi\|237706559\|ref\|ZP_04537040.1\| lipoprotein ygdI [Escherichia sp. 3_2_53FAA], gi\|226899599\|gb\|EEH858... gi\|254037863, gi... - gi\|254037863\|ref\|ZP_04871921.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683948... gi\|209761198, gi... - gi\|882704\|gb\|AAB40459.1\| ORF_f76, pir\|\|E65063 hypothetical protein b2809 - Escherichia coli (strain ... gi\|26249215, gi\|... - gi\|26249215\|ref\|NP_755255.1\| lipoprotein ygdI precursor [Escherichia coli CFT073], gi\|26109622\|gb\|AA... gi\|82778188, gi\|... - gi\|82778188\|ref\|YP_404537.1\| hypothetical protein SDY_3027 [Shigella dysenteriae Sd197], gi\|81242336... gi\|82545107, gi\|... - gi\|82545107\|ref\|YP_409054.1\| hypothetical protein SBO_2692 [Shigella boydii Sb227], gi\|81246518\|gb\|A... gi\|13363141, gi\|... - gi\|15832923\|ref\|NP_311696.1\| hypothetical protein ECs3669 [Escherichia coli O157:H7], gi\|13363141\|db... gi\|1789174, gi\|1... - gb\|AAC75851.1\| orf, hypothetical protein; unknown CDS [Escherichia coli K12], gi\|16130716\|ref\|NP_41... gi\|882704\|gb\|AAB... - ORF_f76 gi\|75215046, gi\|... - gi\|75215046\|ref\|ZP_00713506.1\| hypothetical protein EcolE1_01004348 [Escherichia coli E110019], gi\|1... gi\|75227275, gi\|... - gi\|75227275\|ref\|ZP_00714068.1\| hypothetical protein EcolB7_01004292 [Escherichia coli B7A], gi\|19116... gi\|75196780 - gi\|75196780\|ref\|ZP_00706850.1\| hypothetical protein EcolH_01002592 [Escherichia coli HS] gi\|75212571 - gi\|75212571\|ref\|ZP_00712595.1\| hypothetical protein EcolB_01000658 [Escherichia coli B171] gi\|75511952 - gi\|75511952\|ref\|ZP_00734555.1\| hypothetical protein Ecol5_01003822 [Escherichia coli 53638] gi\|91212179, gi\|... - gi\|91212179\|ref\|YP_542165.1\| hypothetical protein UTI89_C3182 [Escherichia coli UTI89], gi\|91073753\|... gi\|74313380, gi\|... - gi\|74313380\|ref\|YP_311799.1\| hypothetical protein SSON_2966 [Shigella sonnei Ss046], gi\|73856857\|gb\|... gi\|13363141, gi\|... - gi\|15832923\|ref\|NP_311696.1\| hypothetical protein ECs3669 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|75241800 - gi\|75241800\|ref\|ZP_00725619.1\| hypothetical protein EcolF_01001160 [Escherichia coli F11] gi\|194416892, gi... - gi\|194434873\|ref\|ZP_03067120.1\| putative lipoprotein [Shigella dysenteriae 1012], gi\|194416892\|gb\|ED... gi\|75256852 - gi\|75256852\|ref\|ZP_00728446.1\| hypothetical protein EcolE2_01003272 [Escherichia coli E22]	99.0	[0..1]	[71..2]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWAVIISA VGLAFAVSGC SSDYVMATKD GRMILTDGKP EIDDDTGLVS YHDQQGNAMQ  60
   61 INRDDVSQII ER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2jn0A
Description:	No description for 2jn0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits