YRC Public Data Repository - Protein Structure Prediction

Protein:	PROB_ECO55
Organism:	Escherichia coli 55989
Length:	367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROB_ECO55.

Description	E-value	Query Range	Subject Range
PROB_THETN - Glutamate 5-kinase OS=Thermoanaerobacter tengcongensis GN=proB PE=3 SV=1 gi\|254479125, gi... - gi\|254479125\|ref\|ZP_05092476.1\| glutamate 5-kinase [Carboxydibrachium pacificum DSM 12653], gi\|22348... PROB_CALS4 - Glutamate 5-kinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 110...	371.0	[0..6]	[366..2]
gi\|241902816, gi... - gi\|241902816\|ref\|ZP_04787547.1\| glutamate 5-kinase [Thermoanaerobacter brockii subsp. finnii Ako-1],... gi\|242257172, gi... - gi\|242257172\|ref\|ZP_04802045.1\| glutamate 5-kinase [Thermoanaerobacter sp. X513], gi\|242231277\|gb\|EE... PROB_THEPX - Glutamate 5-kinase OS=Thermoanaerobacter sp. (strain X514) GN=proB PE=3 SV=1 PROB_THEP3 - Glutamate 5-kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=proB PE=3 SV=...	366.0	[0..6]	[366..2]
gi\|98661612 - gi\|98661612\|dbj\|GAA01401.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	358.0	[0..2]	[366..11]
PROB_THICR - Glutamate 5-kinase OS=Thiomicrospira crunogena (strain XCL-2) GN=proB PE=3 SV=1	357.0	[0..2]	[366..9]
PROB_DECAR - Glutamate 5-kinase OS=Dechloromonas aromatica (strain RCB) GN=proB PE=3 SV=1	357.0	[0..1]	[366..6]
PROB_METCA - Glutamate 5-kinase OS=Methylococcus capsulatus GN=proB PE=3 SV=1 PROB_METCA - Glutamate 5-kinase OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=proB PE=3...	354.0	[0..1]	[366..7]
gi\|91070905, gi\|... - gi\|91209331\|ref\|YP_539317.1\| glutamate 5-kinase [Escherichia coli UTI89], gi\|91070905\|gb\|ABE05786.1\|... gi\|26106685, gi\|... - gi\|26246287\|ref\|NP_752326.1\| gamma-glutamyl kinase [Escherichia coli CFT073], gi\|26106685\|gb\|AAN7887...	353.0	[0..1]	[367..14]
PROB_NITMU - Glutamate 5-kinase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=proB PE=3 SV=1	351.0	[0..1]	[366..5]
PROB_SYNP6 - Glutamate 5-kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=proB PE=3 SV...	351.0	[0..6]	[366..7]
PROB_GEOMG - Glutamate 5-kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=proB PE=3 ...	351.0	[0..1]	[366..6]

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Predicted Domain #1

Region A:
Residues: [1-367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSQTLVVK LGTSVLTGGS RRLNRAHIVE LVRQCAQLHA AGHRIVIVTS GAIAAGREHL  60
   61 GYPELPATIA SKQLLAAVGQ SRLIQLWEQL FSIYGIHVGQ MLLTRADMED RERFLNARDT 120
  121 LRALLDNNIV PVINENDAVA TAEIKVGDND NLSALAAILA GADKLLLLTD QKGLYTADPR 180
  181 SNPQAELIKD VYGIDDALRA IAGDSVSGLG TGGMSTKLQA ADVACRAGID TIIAAGSKPG 240
  241 VIGDVMEGIS VGTLFHAQAT PLENRKRWIF GAPPAGEITV DEGATAAILE RGSSLLPKGI 300
  301 KSVTGNFSRG EVIRICNLEG RDIAHGVSRY NSDALRRIAG HHSQEIDAIL GYEYGPVAVH 360
  361 RDDMITR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.522879
Match:	2j5tA
Description:	No description for 2j5tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits