YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167050879, gi...
Organism:	Yersinia pestis biovar Antiqua str. UG05-0454
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167050879, gi....

Description	E-value	Query Range	Subject Range
gi\|146317300, gi... - gi\|75827406\|ref\|ZP_00756841.1\| COG0716: Flavodoxins [Vibrio cholerae O395], gi\|227118546\|ref\|YP_0028... gi\|90074876 - gi\|90074876\|dbj\|BAE87115.1\| flavodoxin 1 [Vibrio cholerae bv. albensis] gi\|15642099, gi\|... - gi\|9656648\|gb\|AAF95245.1\| flavodoxin 1 [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|15642099\|r... gi\|11250201 - pir\|\|A82120 flavodoxin [similarity] - Vibrio cholerae (strain N16961 serogroup O1) gi\|153831270, gi... - gi\|153831270\|ref\|ZP_01983937.1\| flavodoxin 1 [Vibrio cholerae 623-39], gi\|148873250\|gb\|EDL71385.1\| f... gi\|227082225, gi... - gi\|227082225\|ref\|YP_002810776.1\| flavodoxin 1 [Vibrio cholerae M66-2], gi\|227010113\|gb\|ACP06325.1\| f... gi\|229355317, gi... - gi\|229507812\|ref\|ZP_04397317.1\| flavodoxin 1 [Vibrio cholerae BX 330286], gi\|229355317\|gb\|EEO20238.1... gi\|229511951, gi... - gi\|229511951\|ref\|ZP_04401430.1\| flavodoxin 1 [Vibrio cholerae B33], gi\|229351916\|gb\|EEO16857.1\| flav... gi\|254844891, gi... - gi\|254849186\|ref\|ZP_05238536.1\| flavodoxin FldA [Vibrio cholerae MO10], gi\|254844891\|gb\|EET23305.1\| ... gi\|229348935, gi... - gi\|229513754\|ref\|ZP_04403216.1\| flavodoxin 1 [Vibrio cholerae TMA 21], gi\|229348935\|gb\|EEO13892.1\| f... gi\|229519087, gi... - gi\|229519087\|ref\|ZP_04408530.1\| flavodoxin 1 [Vibrio cholerae RC9], gi\|229343776\|gb\|EEO08751.1\| flav... gi\|229522056, gi... - gi\|229522056\|ref\|ZP_04411473.1\| flavodoxin 1 [Vibrio cholerae TM 11079-80], gi\|229340981\|gb\|EEO05986... gi\|229524105, gi... - gi\|229524105\|ref\|ZP_04413510.1\| flavodoxin 1 [Vibrio cholerae bv. albensis VL426], gi\|229337686\|gb\|E... gi\|229332659, gi... - gi\|229528885\|ref\|ZP_04418275.1\| flavodoxin 1 [Vibrio cholerae 12129(1)], gi\|229332659\|gb\|EEN98145.1\|... gi\|229607357, gi... - gi\|229607357\|ref\|YP_002878005.1\| flavodoxin 1 [Vibrio cholerae MJ-1236], gi\|229370012\|gb\|ACQ60435.1\|...	3.0E-45	[1..174]	[1..174]
gi\|117622892, gi... - gi\|117622892\|ref\|YP_851805.1\| flavodoxin FldA [Escherichia coli APEC O1], gi\|115512016\|gb\|ABJ00091.1... gi\|237707346, gi... - gi\|237707346\|ref\|ZP_04537827.1\| flavodoxin FldA [Escherichia sp. 3_2_53FAA], gi\|226898556\|gb\|EEH8481... gi\|26246661, gi\|... - gi\|26246661\|ref\|NP_752701.1\| flavodoxin [Escherichia coli CFT073], gi\|26107060\|gb\|AAN79244.1\|AE01675... gi\|157065844, gi... - gi\|157160164\|ref\|YP_001457482.1\| flavodoxin FldA [Escherichia coli HS], gi\|157065844\|gb\|ABV05099.1\| ... gi\|188495523, gi... - gi\|188495523\|ref\|ZP_03002793.1\| flavodoxin [Escherichia coli 53638], gi\|188490722\|gb\|EDU65825.1\| fla... gi\|157157770, gi... - gi\|157157770\|ref\|YP_001461848.1\| flavodoxin FldA [Escherichia coli E24377A], gi\|157079800\|gb\|ABV1950... gi\|91071301, gi\|... - gi\|91209727\|ref\|YP_539713.1\| flavodoxin FldA [Escherichia coli UTI89], gi\|91071301\|gb\|ABE06182.1\| fl... gi\|110804679, gi... - gi\|110804679\|ref\|YP_688199.1\| flavodoxin FldA [Shigella flexneri 5 str. 8401], gi\|110614227\|gb\|ABF02...	3.0E-45	[1..174]	[40..213]
gi\|21104364 - gi\|21104364\|dbj\|BAB93452.1\| flavodoxin [Actinobacillus actinomycetemcomitans]	4.0E-45	[1..173]	[1..173]
gi\|42629140 - gi\|42629140\|ref\|ZP_00154689.1\| COG0716: Flavodoxins [Haemophilus influenzae R2846] gi\|42630494 - gi\|42630494\|ref\|ZP_00156033.1\| COG0716: Flavodoxins [Haemophilus influenzae R2866] gi\|144983098 - gi\|144983098\|gb\|EDJ90598.1\| flavodoxin [Haemophilus influenzae R3021] FLAV_HAEIN - Flavodoxin OS=Haemophilus influenzae GN=fldA PE=3 SV=2 gi\|148827330, gi... - gi\|148827330\|ref\|YP_001292083.1\| flavodoxin FldA [Haemophilus influenzae PittGG], gi\|148718572\|gb\|AB... FLAV_HAEIN - Flavodoxin OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=fldA PE=3 SV=2 gi\|148825543, gi... - gi\|148825543\|ref\|YP_001290296.1\| flavodoxin FldA [Haemophilus influenzae PittEE], gi\|148715703\|gb\|AB... gi\|145271120, gi... - gi\|145639752\|ref\|ZP_01795354.1\| flavodoxin [Haemophilus influenzae PittII], gi\|145271120\|gb\|EDK11035... gi\|68056995, gi\|... - gi\|68248796\|ref\|YP_247908.1\| flavodoxin FldA [Haemophilus influenzae 86-028NP], gi\|68056995\|gb\|AAX87... gi\|145267099, gi... - gi\|145635626\|ref\|ZP_01791323.1\| flavodoxin [Haemophilus influenzae PittAA], gi\|145267099\|gb\|EDK07106... gi\|229811894, gi... - gi\|229845183\|ref\|ZP_04465317.1\| flavodoxin FldA [Haemophilus influenzae 6P18H1], gi\|229811894\|gb\|EEP... gi\|229847366, gi... - gi\|229847366\|ref\|ZP_04467467.1\| flavodoxin FldA [Haemophilus influenzae 7P49H1], gi\|229809692\|gb\|EEP... gi\|144985371, gi... - gi\|145633800\|ref\|ZP_01789524.1\| flavodoxin [Haemophilus influenzae 3655], gi\|144985371\|gb\|EDJ92201.1... gi\|145631313 - gi\|145631313\|ref\|ZP_01787085.1\| flavodoxin [Haemophilus influenzae 22.4-21] gi\|145628492, gi... - gi\|145628492\|ref\|ZP_01784292.1\| flavodoxin [Haemophilus influenzae 22.1-21], gi\|144978962\|gb\|EDJ8864...	9.0E-45	[1..173]	[1..173]
gi\|75435990, gi\|... - gi\|75435990\|ref\|ZP_00733293.1\| flavodoxins [Actinobacillus succinogenes 130Z], gi\|74276000\|gb\|EAO496...	2.0E-44	[1..173]	[1..173]
gi\|52424915, gi\|... - gi\|52424915\|ref\|YP_088052.1\| flavodoxin FldA [Mannheimia succiniciproducens MBEL55E], gi\|52306967\|gb...	3.0E-44	[1..173]	[1..173]
gi\|54308229, gi\|... - gi\|54308229\|ref\|YP_129249.1\| flavodoxin FldA [Photobacterium profundum SS9], gi\|46912657\|emb\|CAG1944...	3.0E-44	[1..173]	[1..173]
gi\|15602218, gi\|... - gi\|15602218\|ref\|NP_245290.1\| flavodoxin FldA [Pasteurella multocida subsp. multocida str. Pm70], gi\|...	5.0E-44	[1..173]	[1..173]
gi\|90327476, gi\|... - gi\|90411586\|ref\|ZP_01219596.1\| flavodoxin [Photobacterium profundum 3TCK], gi\|90327476\|gb\|EAS43829.1...	7.0E-44	[1..173]	[1..173]
gi\|88860195, gi\|... - gi\|88860195\|ref\|ZP_01134834.1\| flavodoxin [Pseudoalteromonas tunicata D2], gi\|88818189\|gb\|EAR28005.1...	8.0E-44	[1..174]	[1..174]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVGIFFGS DTGNTENIAK MIQKQLGKEV AEVHDIAKSS KEDLESFDIL LFGIPTWYYG  60
   61 EAQCDWDDFF PTLEEIDFNG KLVALFGCGD QEDYAEYFCD AMGTIRDIIE PRGAAIVGHW 120
  121 PTAGYHFEAS KGLADDDHFI GLAIDEDRQP ELTNERVEAW VKQISEELNL SEIIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.045757
Match:	1ag9A
Description:	Flavodoxin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.0467816962267	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	1.85486974695416	bayes_pls_golite062009
binding	0.681337940863521	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	0.650874844500866	bayes_pls_golite062009
catalytic activity	0.275631658558537	bayes_pls_golite062009
coenzyme binding	0.265571968246766	bayes_pls_golite062009
protein binding	0.251879151875848	bayes_pls_golite062009
FMN binding	0.056297096581433	bayes_pls_golite062009
cofactor binding	0.0451815885965905	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: