YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189374219, gi...
Organism:	Escherichia coli O157:H7 str. EC869
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189374219, gi....

Description	E-value	Query Range	Subject Range
gi\|82778363, gi\|... - gi\|82778363\|ref\|YP_404712.1\| modulator of drug activity B [Shigella dysenteriae Sd197], gi\|81242511\|...	195.0	[0..1]	[193..1]
gi\|110806921, gi... - gi\|110806921\|ref\|YP_690441.1\| modulator of drug activity B [Shigella flexneri 5 str. 8401], gi\|11061...	195.0	[0..1]	[193..1]
gi\|110344860, gi... - gi\|110643268\|ref\|YP_670998.1\| modulator of drug activity B [Escherichia coli 536], gi\|110344860\|gb\|A...	195.0	[0..1]	[193..1]
gi\|254162977, gi... - gi\|254162977\|ref\|YP_003046085.1\| NADPH quinone reductase [Escherichia coli B str. REL606], gi\|253974... gi\|73857043, gi\|... - gi\|74313566\|ref\|YP_311985.1\| modulator of drug activity B [Shigella sonnei Ss046], gi\|73857043\|gb\|AA... gi\|253979034, gi... - gi\|254289727\|ref\|YP_003055475.1\| NADPH quinone reductase [Escherichia coli BL21(DE3)], gi\|253979034\|... gi\|251786307, gi... - gi\|251786307\|ref\|YP_003000611.1\| hypothetical protein B21_02850 [Escherichia coli BL21], gi\|24237858...	195.0	[0..1]	[193..1]
gi\|30064378, gi\|... - gi\|30064378\|ref\|NP_838549.1\| modulator of drug activity B [Shigella flexneri 2a str. 2457T], gi\|3004... gi\|24114329, gi\|... - gi\|24114329\|ref\|NP_708839.1\| modulator of drug activity B [Shigella flexneri 2a str. 301], gi\|240534...	192.0	[0..1]	[193..1]
gi\|114793504, gi... - gi\|114793505\|pdb\|2B3D\|B Chain B, Crystal Structure Of Modulator Of Drug Activity B In Complex With F...	191.0	[0..3]	[193..14]
gi\|50119296, gi\|... - gi\|50119296\|ref\|YP_048463.1\| putative modulator of drug activity B [Pectobacterium atrosepticum SCRI...	190.0	[0..1]	[193..1]
gi\|194735874, gi... - gi\|194735874\|ref\|YP_002116133.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. e... gi\|197251739, gi... - gi\|197251739\|ref\|YP_002148106.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. e... gi\|194442855, gi... - gi\|194442855\|ref\|YP_002042445.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. e... gi\|194473002, gi... - gi\|194473002\|ref\|ZP_03078986.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. en... gi\|195633767, gi... - gi\|195633767\|gb\|EDX52181.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. enteri... gi\|205343527, gi... - gi\|205343527\|gb\|EDZ30291.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. enteri... gi\|168231777, gi... - gi\|205333797\|gb\|EDZ20561.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. enteri... gi\|197289007, gi... - gi\|197289007\|gb\|EDY28378.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. enteri... gi\|56129377, gi\|... - gi\|56415120\|ref\|YP_152195.1\| NADPH specific quinone oxidoreductase (drug modulator) [Salmonella ente... gi\|205323351, gi... - gi\|205323351\|gb\|EDZ11190.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. enteri... gi\|167990271, gi... - gi\|205331116\|gb\|EDZ17880.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. enteri... gi\|161616167, gi... - gi\|161616167\|ref\|YP_001590132.1\| hypothetical protein SPAB_03969 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=mdaB] [protein=NADPH-specific quinone oxidoreductase] [protein_id=YP_005239351.1] [location=33... gi\|238909980 - gi\|238909980\|ref\|ZP_04653817.1\| putative oxidoreductase [Salmonella enterica subsp. enterica serovar... gi\|206710241, gi... - gi\|207858438\|ref\|YP_002245089.1\| putative oxidoreductase [Salmonella enterica subsp. enterica serova... gi\|16421735, gi\|... - gi\|16766479\|ref\|NP_462094.1\| NADPH-specific quinone oxidoreductase [Salmonella typhimurium LT2], gi\|... gi\|204322515, gi... - gi\|204928193\|ref\|ZP_03219393.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. en... gi\|205354095, gi... - gi\|205354095\|ref\|YP_002227896.1\| putative oxidoreductase [Salmonella enterica subsp. enterica serova... gi\|198243237, gi... - gi\|198243237\|ref\|YP_002217158.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. e... gi\|200388920, gi... - gi\|200388920\|ref\|ZP_03215532.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. en... gi\|197242750, gi... - gi\|197264495\|ref\|ZP_03164569.1\| NADPH-specific quinone oxidoreductase [Salmonella enterica subsp. en... gi\|197095526, gi... - gi\|197364049\|ref\|YP_002143686.1\| NADPH specific quinone oxidoreductase (drug modulator) [Salmonella ...	187.0	[0..1]	[193..1]
gi\|7379335, gi\|1... - gi\|7379335\|emb\|CAB83890.1\| hypothetical protein NMA0600 [Neisseria meningitidis Z2491], gi\|218767561... gi\|11253238 - pir\|\|D81979 hypothetical protein NMA0600 [imported] - Neisseria meningitidis (strain Z2491 serogroup... gi\|254671006 - gi\|254671006\|emb\|CBA07775.1\| modulator of drug activity B [Neisseria meningitidis alpha153]	187.0	[0..2]	[193..1]
gi\|11253243 - pir\|\|F81035 modulator of drug activity B NMB1857 [imported] - Neisseria meningitidis (strain MC58 se... gi\|15677692, gi\|... - gi\|7227113\|gb\|AAF42191.1\| modulator of drug activity B [Neisseria meningitidis MC58], gi\|15677692\|re...	186.0	[0..2]	[193..1]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNILIINGA KKFAHSNGQL NDTLTEVADG TLRDLGHDVR IVRADSDYDV KAEVQNFLWA  60
   61 DVVIWQMPGW WMGAPWTVKK YIDDVFTEGH GTLYASDGRT RKDPSKKYGS GGLVQGKKYM 120
  121 LSLTWNAPME AFTEKDQFFH GVGVDGVYLP FHKANQFLGM EPLPTFIAND VIKMPDVPRY 180
  181 TEEYRKHLVE IFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2amjA
Description:	No description for 2amjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits