YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208727739, gi...
Organism:	Escherichia coli O157:H7 str. EC4206
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208727739, gi....

Description	E-value	Query Range	Subject Range
gi\|83571678 - gi\|83571678\|ref\|ZP_00923118.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Shigella dyse...	396.0	[0..1]	[294..1]
gi\|81247167, gi\|... - gi\|82545756\|ref\|YP_409703.1\| hypothetical protein SBO_3388 [Shigella boydii Sb227], gi\|81247167\|gb\|A...	393.0	[0..1]	[294..1]
gi\|205330650, gi... - gi\|205357594\|ref\|ZP_02571798.2\| chaperonin HslO [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|197264805, gi... - gi\|197264805\|ref\|ZP_03164879.1\| chaperonin HslO [Salmonella enterica subsp. enterica serovar Saintpa... gi\|16422056, gi\|... - gi\|16766786\|ref\|NP_462401.1\| Hsp33-like chaperonin [Salmonella typhimurium LT2], gi\|16422056\|gb\|AAL2...	392.0	[0..1]	[294..1]
HSLO_ECO57 - 33 kDa chaperonin OS=Escherichia coli O157:H7 GN=hslO PE=3 SV=1 EG12930 - heat shock protein Hsp33 / Hsp33, oxidative stress-induced heat shock chaperone; C-terminal zinc-bin... HSLO_ECOL6 - 33 kDa chaperonin OS=Escherichia coli O6 GN=hslO PE=3 SV=1 gi\|89110609, gi\|... - gi\|89110609\|ref\|AP_004389.1\| heat shock protein Hsp33 [Escherichia coli str. K-12 substr. W3110], gi... gi\|13363717, gi\|... - gi\|162139723\|ref\|NP_312270.3\| Hsp33-like chaperonin [Escherichia coli O157:H7 str. Sakai], gi\|133637... HSLO_ECO81 - 33 kDa chaperonin OS=Escherichia coli O81 (strain ED1a) GN=hslO PE=3 SV=1 HSLO_ECO45 - 33 kDa chaperonin OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=hslO PE=3 SV=1 HSLO_ECO8A - 33 kDa chaperonin OS=Escherichia coli O8 (strain IAI1) GN=hslO PE=3 SV=1 HSLO_ECO27 - 33 kDa chaperonin OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hslO PE=3 SV=1 HSLO_ECO55 - 33 kDa chaperonin OS=Escherichia coli (strain 55989 / EAEC) GN=hslO PE=3 SV=1 gi\|161367508 - gi\|161367508\|ref\|NP_289940.2\| Hsp33-like chaperonin [Escherichia coli O157:H7 EDL933] HSLO_ECOSM - 33 kDa chaperonin OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hslO PE=3 SV=1 HSLO_ECODH - 33 kDa chaperonin OS=Escherichia coli (strain K12 / DH10B) GN=hslO PE=3 SV=1 gi\|189369606, gi... - gi\|189369606\|gb\|EDU88022.1\| chaperonin HslO [Escherichia coli O157:H7 str. EC4501], gi\|168759423\|ref... HSLO_ECOL6 - 33 kDa chaperonin OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hslO PE=3 SV=1 HSLO_SHIDS - 33 kDa chaperonin OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=hslO PE=3 SV=2 HSLO_SHISS - 33 kDa chaperonin OS=Shigella sonnei (strain Ss046) GN=hslO PE=3 SV=2 sp\|B7UKA5\|HSLO_ECO27 - 33 kDa chaperonin OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hslO PE=3 SV=1 HSLO_ECOLI - 33 kDa chaperonin (Heat shock protein 33) (HSP33) - Escherichia coli gi\|251786652, gi... - gi\|251786652\|ref\|YP_003000956.1\| hypothetical protein B21_03205 [Escherichia coli BL21], gi\|24237892... HSLO_ECOBW - 33 kDa chaperonin OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=hslO PE=3 SV=1 gi\|253975230, gi... - gi\|254163329\|ref\|YP_003046437.1\| Hsp33-like chaperonin [Escherichia coli B str. REL606], gi\|25397523... EG12930 - heat shock protein Hsp33 / Hsp33, oxidative stress-induced heat shock chaperone; C-terminal zinc-bin... gi\|254290079, gi... - gi\|254290079\|ref\|YP_003055827.1\| Hsp33-like chaperonin [Escherichia coli BL21(DE3)], gi\|253979386\|gb... gi\|254594715, gi... - gi\|254795315\|ref\|YP_003080152.1\| heat shock protein Hsp33 [Escherichia coli O157:H7 str. TW14359], g...	391.0	[0..3]	[294..1]
gi\|187428841, gi... - gi\|75179981\|ref\|ZP_00699968.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Shigella boyd...	390.0	[0..1]	[294..1]
gi\|161365900, gi... - gi\|161616536\|ref\|YP_001590501.1\| Hsp33-like chaperonin [Salmonella enterica subsp. enterica serovar ... gi\|62182000, gi\|... - gi\|62182000\|ref\|YP_218417.1\| Hsp33-like chaperonin [Salmonella enterica subsp. enterica serovar Chol...	389.0	[0..1]	[294..1]
lcl\|NC_016856.1_... - [gene=hslO] [protein=Hsp33-like chaperonin] [protein_id=YP_005239697.1] [location=3667384..3668262] HSLO_SALTY - 33 kDa chaperonin OS=Salmonella typhimurium GN=hslO PE=3 SV=2 HSLO_SALTY - 33 kDa chaperonin OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=hslO PE=3 SV=2 HSLO_SALTY - 33 kDa chaperonin OS=Salmonella typhimurium GN=hslO PE=3 SV=2	388.0	[0..3]	[294..1]
gi\|238788970, gi... - gi\|77975052\|ref\|ZP_00830589.1\| COG1281: Disulfide bond chaperones of the HSP33 family [Yersinia fred...	387.0	[0..3]	[294..1]
gi\|16762789 - gi\|16762789\|ref\|NP_458406.1\| Hsp33-like chaperonin [Salmonella enterica subsp. enterica serovar Typh... HSLO_SALTI - 33 kDa chaperonin OS=Salmonella typhi GN=hslO PE=3 SV=1 gi\|29144276, gi\|... - gi\|29144276\|ref\|NP_807618.1\| Hsp33-like chaperonin [Salmonella enterica subsp. enterica serovar Typh... gi\|213426733 - gi\|213426733\|ref\|ZP_03359483.1\| Hsp33-like chaperonin [Salmonella enterica subsp. enterica serovar T... HSLO_SALTI - 33 kDa chaperonin OS=Salmonella typhi GN=hslO PE=3 SV=1	386.0	[0..3]	[294..1]
HSLO_SALPA - 33 kDa chaperonin OS=Salmonella paratyphi A GN=hslO PE=3 SV=1 HSLO_SALPK - 33 kDa chaperonin OS=Salmonella paratyphi A (strain AKU_12601) GN=hslO PE=3 SV=1 HSLO_SALPA - 33 kDa chaperonin OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=hslO PE=3 SV=1	385.0	[0..3]	[294..1]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMPQHDQLH RYLFENFAVR GELVTVSETL QQILENHDYP QPVKNVLAEL LVATSLLTAT  60
   61 LKFDGDITVQ LQGDGPMNLA VINGNNNQQM RGVARVQGEI PENADLKTLV GNGYVVITIT 120
  121 PSEGERYQGV VGLEGDTLAA CLEDYFMRSE QLPTRLFIRT GDVDGKPAAG GMLLQVMPAQ 180
  181 NAQQDDFDHL ATLTETIKTE ELLTLPANEV LWRLYHEEEV TVYDPQDVEF KCTCSRERCA 240
  241 DALKTLPDEE VDSILAEDGE IDMHCDYCGN HYLFNAMDIA EIRNNASPAD PQVH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	1i7fA
Description:	Heat shock protein 33, Hsp33
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.55988368958585	bayes_pls_golite062009
catalytic activity	0.276917867171685	bayes_pls_golite062009
protein binding	0.100538309706115	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: