YRC Public Data Repository - Protein Structure Prediction

Protein:	PQQD_PSEA8
Organism:	Pseudomonas aeruginosa LESB58
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PQQD_PSEA8.

Description	E-value	Query Range	Subject Range
PQQD_RAHAQ - Coenzyme PQQ synthesis protein D OS=Rahnella aquatilis GN=pqqD PE=3 SV=2	139.0	[0..1]	[92..1]
PQQD_PSEA7 - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain PA7) GN=pqqD PE=3 SV=1	138.0	[0..1]	[92..1]
gi\|194551410, gi... - gi\|84327661\|ref\|ZP_00975678.1\| hypothetical protein Paer2_01001096 [Pseudomonas aeruginosa 2192], gi...	137.0	[0..1]	[92..1]
gi\|67088389, gi\|... - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP], gi\|67088389\|g... gi\|67154256 - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP]	133.0	[0..1]	[91..3]
PQQD_PSEU2 - Coenzyme PQQ synthesis protein D OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pqqD PE=3 SV...	130.0	[0..6]	[91..8]
gi\|59891640 - gi\|59891640\|gb\|AAX10037.1\| pyrroloquinoline quinone biosynthesis protein D [Pseudomonas fluorescens]	130.0	[0..5]	[91..4]
gi\|95108660 - gi\|95108660\|emb\|CAK13354.1\| coenzyme PQQ synthesis protein D (Coenzyme PQQ synthesis protein II) [Ps... PQQD_PSEE4 - Coenzyme PQQ synthesis protein D OS=Pseudomonas entomophila (strain L48) GN=pqqD PE=3 SV=1	129.0	[0..5]	[91..4]
gi\|82738185, gi\|... - gi\|82738185\|ref\|ZP_00901023.1\| coenzyme PQQ synthesis protein D [Pseudomonas putida F1], gi\|82714792...	129.0	[0..5]	[91..11]
PQQD_PSESM - Coenzyme PQQ synthesis protein D OS=Pseudomonas syringae pv. tomato GN=pqqD PE=3 SV=1 PQQD_PSESM - Coenzyme PQQ synthesis protein D OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pqqD PE=3 SV=...	128.0	[0..6]	[91..12]
PQQD_PSEPF - Coenzyme PQQ synthesis protein D OS=Pseudomonas fluorescens (strain Pf0-1) GN=pqqD PE=3 SV=1	127.0	[0..5]	[91..4]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPSLDSVP MLRRGFRFQF EPAQDCHVLL YPEGMVKLND SAGEILKLVD GRRDVAAIVA  60
   61 ALRERFPEVP GIDEDILAFL EVAHAQFWIE LQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.958607
Match:	PF05402.3
Description:	No description for PF05402.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits