YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218549430, gi...
Organism:	Escherichia fergusonii ATCC 35469
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218549430, gi....

Description	E-value	Query Range	Subject Range
Q663E5\|Q663E5_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|51591648, gi\|... - gi\|51593951\|ref\|YP_068517.1\| hypothetical protein pYptb0009 [Yersinia pseudotuberculosis IP 32953], ...	137.0	[0..1]	[84..1]
gi\|46143499 - gi\|46143499\|ref\|ZP_00204490.1\| COG4115: Uncharacterized protein conserved in bacteria [Actinobacillu...	135.0	[0..1]	[84..1]
YOEB_STRCO - Toxin YoeB OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=yoeB PE=3 SV=1 YOEB_STRCO - Toxin YoeB OS=Streptomyces coelicolor GN=yoeB PE=3 SV=1	133.0	[0..1]	[84..1]
YOEB_ECOL6 - Toxin YoeB OS=Escherichia coli O6 GN=yoeB PE=3 SV=1 gi\|91072877, gi\|... - gi\|91211303\|ref\|YP_541289.1\| hypothetical protein UTI89_C2290 [Escherichia coli UTI89], gi\|91072877\|... gi\|110642230, gi... - gi\|110642230\|ref\|YP_669960.1\| hypothetical protein ECP_2060 [Escherichia coli 536], gi\|110343822\|gb\|... YOEB_ECOL6 - Toxin YoeB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yoeB PE=3 SV=1 gi\|190909505, gi... - gi\|191169989\|ref\|ZP_03031543.1\| addiction module toxin component YoeB [Escherichia coli F11], gi\|190...	133.0	[0..1]	[84..1]
gi\|28806812 - gi\|28806812\|dbj\|BAC60083.1\| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28898594, gi\|... - gi\|28898594\|ref\|NP_798199.1\| hypothetical protein VP1820 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|37198723, gi\|... - gi\|37679977\|ref\|NP_934586.1\| hypothetical protein VV1793 [Vibrio vulnificus YJ016], gi\|37198723\|dbj\|...	132.0	[0..3]	[84..9]
gi\|117624220, gi... - gi\|117624220\|ref\|YP_853133.1\| hypothetical protein APECO1_1114 [Escherichia coli APEC O1], gi\|115513... gi\|237704474, gi... - gi\|237704474\|ref\|ZP_04534955.1\| toxin YoeB [Escherichia sp. 3_2_53FAA], gi\|226900840\|gb\|EEH87099.1\| ...	131.0	[0..1]	[84..1]
gi\|56313359, gi\|... - gi\|56477316\|ref\|YP_158905.1\| hypothetical protein ebB103 [Aromatoleum aromaticum EbN1], gi\|56313359\|...	130.0	[0..1]	[84..1]
gi\|77384859, gi\|... - gi\|77460856\|ref\|YP_350363.1\| addiction module toxin, Txe/YoeB [Pseudomonas fluorescens Pf0-1], gi\|77...	130.0	[0..1]	[84..1]
gi\|15077436 - gi\|15077436\|gb\|AAK83163.1\|AF333038_3 AviX3 [Streptomyces viridochromogenes]	130.0	[0..1]	[84..1]
gi\|50119394, gi\|... - gi\|50119394\|ref\|YP_048561.1\| hypothetical protein ECA0443 [Pectobacterium atrosepticum SCRI1043], gi...	129.0	[0..1]	[84..1]

Back

Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIWSEESW DDYLYWQETD KRIVKKINEL IKDTRRTPFE GKGKPEPLKH NLSGFWSRRI  60
   61 TEEHRLVYAV TDDSLLIAAC RYHY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.221849
Match:	2a6qE
Description:	Crystal structure of YefM-YoeB complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits