YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167400656, gi...
Organism:	Yersinia pestis biovar Antiqua str. UG05-0454
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167400656, gi....

Description	E-value	Query Range	Subject Range
Q664E8\|Q664E8_YERPS - Putative glycerate kinase - Yersinia pseudotuberculosis gi\|51598111, gi\|... - gi\|51598111\|ref\|YP_072302.1\| putative glycerate kinase [Yersinia pseudotuberculosis IP 32953], gi\|51...	0.0	[1..378]	[1..378]
gi\|153949377, gi... - gi\|77631053\|ref\|ZP_00793639.1\| COG1929: Glycerate kinase [Yersinia pseudotuberculosis IP 31758], gi\|...	0.0	[1..378]	[1..378]
gi\|37527947, gi\|... - gi\|37527947\|ref\|NP_931292.1\| glycerate kinase 2 [Photorhabdus luminescens subsp. laumondii TTO1], gi...	0.0	[1..377]	[1..377]
gi\|54310278, gi\|... - gi\|54310278\|ref\|YP_131298.1\| putative glycerate kinase [Photobacterium profundum SS9], gi\|46914719\|e...	0.0	[1..377]	[1..377]
gi\|90412003, gi\|... - gi\|90412003\|ref\|ZP_01220010.1\| putative glycerate kinase [Photobacterium profundum 3TCK], gi\|9032698...	0.0	[1..377]	[1..377]
gi\|68248702, gi\|... - gi\|68248702\|ref\|YP_247814.1\| glycerate kinase [Haemophilus influenzae 86-028NP], gi\|68056901\|gb\|AAX8...	0.0	[1..374]	[1..374]
gi\|144982882 - gi\|144982882\|gb\|EDJ90399.1\| hypothetical protein CGSHi22421_01617 [Haemophilus influenzae R3021] gi\|148825632, gi... - gi\|148825632\|ref\|YP_001290385.1\| hypothetical protein CGSHiEE_02830 [Haemophilus influenzae PittEE],... gi\|145631537 - gi\|145631537\|ref\|ZP_01787305.1\| hypothetical protein CGSHi22421_01617 [Haemophilus influenzae 22.4-2... gi\|53732622 - gi\|53732622\|ref\|ZP_00154820.2\| COG1929: Glycerate kinase [Haemophilus influenzae R2846]	0.0	[1..374]	[1..374]
gi\|89050078, gi\|... - gi\|89074142\|ref\|ZP_01160641.1\| putative glycerate kinase [Photobacterium sp. SKA34], gi\|89050078\|gb\|...	0.0	[1..377]	[1..377]
gi\|59712764, gi\|... - gi\|59712764\|ref\|YP_205540.1\| glycerate kinase [Vibrio fischeri ES114], gi\|59480865\|gb\|AAW86652.1\| gl...	0.0	[1..375]	[1..375]
gi\|37680936, gi\|... - gi\|37680936\|ref\|NP_935545.1\| glycerate kinase [Vibrio vulnificus YJ016], gi\|37199686\|dbj\|BAC95516.1\|...	0.0	[1..377]	[1..377]

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Predicted Domain #1

Region A:
Residues: [1-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIIAPDSF KESLTAMQVA EAIEQGFSEI FPQAEYIKLP MADGGEGTVE SMVAATSGEL  60
   61 VNVEVTGPLG APVKAFYGWM GDGETAVIEM AAASGLHLVA PEQRNPLITT SYGTGELILA 120
  121 ALNHGARKII LGIGGSATND GGAGMMQALG VQLRDQQGKA LTVGGAALAQ LVDIDLSQLD 180
  181 DRLAQTDILV ACDVDNPLCG AKGASAVFGP QKGATPERVQ QLDAALQHYG EKIEQVTGKS 240
  241 VINVAGAGAA GGMGAALFGL LNARLQPGIE IVTEALKLAA TVQNADLVIT GEGRIDSQTI 300
  301 YGKTPVGVAR VAKRFDIPVI AIAGSMAPDY EVVHQHGLDA VFSVLNHIQT LPEALEEASD 360
  361 NIRITARNVA AVWKMGRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	1to6A
Description:	Glycerate kinase from Neisseria meningitidis (serogroup A)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.79401350677351	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: