YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165991377, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165991377, gi....

Description	E-value	Query Range	Subject Range
gi\|22127977, gi\|... - gi\|22127977\|ref\|NP_671400.1\| sugar phosphatase [Yersinia pestis KIM], gi\|21961122\|gb\|AAM87651.1\|AE01... gi\|45443724, gi\|... - gi\|45443724\|ref\|NP_995263.1\| sugar phosphatase [Yersinia pestis biovar Microtus str. 91001], gi\|4543...	2.0E-52	[1..269]	[28..296]
gi\|51591505, gi\|... - gi\|51598223\|ref\|YP_072414.1\| sugar phosphatase [Yersinia pseudotuberculosis IP 32953], gi\|51591505\|e... gi\|77630962, gi\|... - gi\|77630962\|ref\|ZP_00793548.1\| COG0561: Predicted hydrolases of the HAD superfamily [Yersinia pseudo... Q663T6\|Q663T6_YERPS - Putative haloacid dehalogenase-like hydrolase - Yersinia pseudotuberculosis gi\|186893349, gi... - gi\|186893349\|ref\|YP_001870461.1\| sugar phosphatase [Yersinia pseudotuberculosis PB1/+], gi\|186696375...	1.0E-51	[1..269]	[1..269]
gi\|29375718, gi\|... - gi\|29375718\|ref\|NP_814872.1\| HAD superfamily hydrolase [Enterococcus faecalis V583], gi\|29343179\|gb\|... gi\|229308703, gi... - gi\|229546179\|ref\|ZP_04434904.1\| HAD superfamily hydrolase [Enterococcus faecalis TX1332], gi\|2293087... gi\|227518396, gi... - gi\|227518396\|ref\|ZP_03948445.1\| HAD superfamily hydrolase [Enterococcus faecalis TX0104], gi\|2270740... gi\|227177898, gi... - gi\|227552928\|ref\|ZP_03982977.1\| HAD superfamily hydrolase [Enterococcus faecalis HH22], gi\|227177898...	4.0E-51	[1..268]	[1..268]
gi\|56911156, gi\|... - gi\|56964913\|ref\|YP_176644.1\| hypothetical protein ABC3149 [Bacillus clausii KSM-K16], gi\|56911156\|db...	3.0E-49	[3..265]	[2..264]
gi\|224585630, gi... - gi\|224585630\|ref\|YP_002639429.1\| hypothetical protein SPC_3918 [Salmonella enterica subsp. enterica ... gi\|206710860, gi... - gi\|207859057\|ref\|YP_002245708.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Ente... gi\|197241280, gi... - gi\|197263025\|ref\|ZP_03163099.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Saintp... gi\|194403742, gi... - gi\|194445079\|ref\|YP_002043081.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Newpo... gi\|168260385, gi... - gi\|205350165\|gb\|EDZ36796.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|62182319, gi\|... - gi\|62182319\|ref\|YP_218736.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Cholerae... gi\|205325651, gi... - gi\|205325651\|gb\|EDZ13490.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|161616948, gi... - gi\|161616948\|ref\|YP_001590913.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Para...	4.0E-49	[1..268]	[1..268]
gi\|167992424, gi... - gi\|205329366\|gb\|EDZ16130.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|16422404, gi\|... - gi\|16767116\|ref\|NP_462731.1\| sugar phosphatase [Salmonella typhimurium LT2], gi\|16422404\|gb\|AAL22690... lcl\|NC_016856.1_... - [gene=yidA] [protein=sugar phosphatase] [protein_id=YP_005240097.1] [location=complement(4047898..40...	5.0E-49	[1..268]	[1..268]
gi\|16799375 - gi\|16799375\|ref\|NP_469643.1\| hypothetical protein lin0298 [Listeria innocua Clip11262] gi\|25303672, gi\|... - pir\|\|AC1470 conserved hypothetical protein B. subtilis YxeH protein homolog lin0298 [imported] - Lis...	9.0E-49	[3..268]	[2..267]
gi\|77958157, gi\|... - gi\|77958157\|ref\|ZP_00822195.1\| COG0561: Predicted hydrolases of the HAD superfamily [Yersinia bercov...	9.0E-49	[1..268]	[1..268]
gi\|224502434 - gi\|224502434\|ref\|ZP_03670741.1\| hypothetical protein LmonFR_07924 [Listeria monocytogenes FSL R2-561... gi\|16802318 - gi\|16802318\|ref\|NP_463803.1\| hypothetical protein lmo0272 [Listeria monocytogenes EGD-e] gi\|16409637, gi\|... - pir\|\|AI1108 B. subtilis YxeH protein homolog lmo0272 [imported] - Listeria monocytogenes (strain EGD...	1.0E-48	[3..268]	[2..267]
gi\|47096361, gi\|... - gi\|47096361\|ref\|ZP_00233956.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|254900539, gi... - gi\|254900539\|ref\|ZP_05260463.1\| hypothetical protein LmonJ_12014 [Listeria monocytogenes J0161], gi\|... gi\|254937909, gi... - gi\|254937909\|ref\|ZP_05269606.1\| hypothetical protein LmonF6_12304 [Listeria monocytogenes F6900], gi... gi\|127766706, gi... - gi\|254913510\|ref\|ZP_05263522.1\| hypothetical protein LmonJ2_11964 [Listeria monocytogenes J2818], gi...	1.0E-48	[3..268]	[2..267]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIELIAIDM DGTLLNPQHE ITPRVKQAIA AARAKGVCVV LATGRPYIGV QRYLRELNME  60
   61 NSGDYCISNN GALVQKAATG ECILQETLSF EDYLYFEALS RELGVSFQAF DFNTLYTANK 120
  121 DISKYTLHEV MLTGIPLKYR AVEEMDPTLR FPKVMMIDEP ERLDRALAMM PAEVFERFTI 180
  181 MKSAPFYLEI LSKRADKGTG VKMLAEHLGI AQKNVMALGD QGNDIAMVNY AGVGVAMGNA 240
  241 IPELKEIAQY VTGTNCEDGV ATAIEKYIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.09691
Match:	1rkqA
Description:	Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.996930438913923	bayes_pls_golite062009
phosphatase activity	0.0985887286442809	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.0342238658800214	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: