YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194118457, gi...
Organism:	Drosophila persimilis
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194118457, gi....

Description	E-value	Query Range	Subject Range
gi\|62204372, gi\|... - gi\|62955177\|ref\|NP_001017600.1\| hypothetical protein LOC550263 [Danio rerio], gi\|62204372\|gb\|AAH9285...	229.0	[0..1]	[149..1]
gi\|47220948 - gi\|47220948\|emb\|CAG03481.1\| unnamed protein product [Tetraodon nigroviridis]	228.0	[0..1]	[149..1]
POLR2H - polymerase (RNA) II (DNA directed) polypeptide H gi\|62658151, gi\|... - gi\|62658151\|ref\|XP_573313.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide H ... gi\|90077816 - gi\|90077816\|dbj\|BAE88588.1\| unnamed protein product [Macaca fascicularis] gi\|126314756 - gi\|126314756\|ref\|XP_001363950.1\| PREDICTED: similar to RNA polymerase II subunit hRPB17 [Monodelphis... tr\|G1SSB5\|G1SSB5... - pep:novel chromosome:oryCun2:14:81347861:81353351:-1 gene:ENSOCUG00000007078 transcript:ENSOCUT00000... tr\|M3W8E3\|M3W8E3... - RNA polymerase II subunit H OS=Felis catus GN=POLR2H PE=4 SV=1 gi\|61887551 - gi\|61887551\|ref\|XP_581913.1\| PREDICTED: polymerase (RNA) II (DNA directed) polypeptide H isoform 1 [... gi\|57109920 - gi\|57109920\|ref\|XP_535826.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide H ... gi\|167774183, gi... - gi\|208967086\|dbj\|BAG73557.1\| polymerase (RNA) II (DNA directed) polypeptide H [synthetic construct],... tr\|G3I303\|G3I303... - DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Cricetulus griseus GN=I79_017801 PE=4 ... gi\|50752375 - gi\|50752375\|ref\|XP_422761.1\| PREDICTED: similar to RNA polymerase II subunit hRPB17 isoform 2 [Gallu... ENSCJAT00000029117 - null CCDS3264.1_1 - null RPAB3_MOUSE - DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=1 SV=3 gi\|542151990\|ref... - PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC3 isoform X1 [Zonotrichia albico... gi\|149731172 - gi\|149731172\|ref\|XP_001498295.1\| PREDICTED: similar to RNA polymerase II, polypeptide H [Equus cabal... gi\|149442170 - gi\|149442170\|ref\|XP_001511382.1\| PREDICTED: similar to RNA polymerase II subunit hRPB17 [Ornithorhyn...	227.0	[0..1]	[149..1]
gi\|66508630 - gi\|66508630\|ref\|XP_394557.2\| PREDICTED: similar to Rpb8 CG11246-PA isoform 1 [Apis mellifera]	227.0	[0..1]	[149..1]
gi\|157107468, gi... - gi\|157107468\|ref\|XP_001649793.1\| DNA-directed RNA polymerase subunit rpb8 [Aedes aegypti], gi\|108884...	226.0	[0..1]	[149..1]
AGAP012397-PA - DNA-directed RNA polymerases I, II, and III subunit RPABC3\|protein_coding\|3L:41720478:41721034:-1\|ge... gi\|58393552, gi\|... - gi\|58393552\|ref\|XP_320161.2\| AGAP012397-PA [Anopheles gambiae str. PEST], gi\|55234259\|gb\|EAA00358.2\|...	225.0	[0..1]	[149..1]
gi\|62859379 - gi\|62859379\|ref\|NP_001016113.1\| polymerase (RNA) II (DNA directed) polypeptide H [Xenopus (Silurana)...	224.0	[0..1]	[149..1]
gi\|91087535 - gi\|91087535\|ref\|XP_970133.1\| PREDICTED: similar to Rpb8 CG11246-PA [Tribolium castaneum]	223.0	[0..1]	[147..1]
gi\|148232948, gi... - gi\|49117881\|gb\|AAH72811.1\| MGC80152 protein [Xenopus laevis], gi\|148232948\|ref\|NP_001085470.1\| MGC80...	223.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVLFEDIF NVKDMDPEGK KFDRVSRLHC ESESFKMDLI LDINSWLYPM ELGDKFRLVL  60
   61 ATTLREDGCP DSGEYNPMEH EGTRADSFEY VMYGKIYRIE GDEAHNEASR LSAYVSFGGL 120
  121 LMRLQGDANN LHGFEVDQHM YLLMKRLAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.045757
Match:	2f3iA
Description:	No description for 2f3iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits