YRC Public Data Repository - Protein Structure Prediction

Protein:	MUTL_PSEA8
Organism:	Pseudomonas aeruginosa LESB58
Length:	633 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MUTL_PSEA8.

Description	E-value	Query Range	Subject Range
MUTL_PSEA7 - DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain PA7) GN=mutL PE=3 SV=1	0.0	[1..633]	[1..633]
MUTL_PSEAB - DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=mutL PE=3 SV=1 gi\|107104045 - gi\|107104045\|ref\|ZP_01367963.1\| hypothetical protein PaerPA_01005118 [Pseudomonas aeruginosa PACS2]	0.0	[1..633]	[1..633]
MUTL_PSEE4 - DNA mismatch repair protein MutL OS=Pseudomonas entomophila (strain L48) GN=mutL PE=3 SV=1 gi\|95112861 - gi\|95112861\|emb\|CAK17589.1\| DNA mismatch repair protein MutL [Pseudomonas entomophila L48]	0.0	[1..633]	[1..632]
MUTL_PSEPK - DNA mismatch repair protein MutL OS=Pseudomonas putida (strain KT2440) GN=mutL PE=3 SV=1	0.0	[1..633]	[1..632]
gi\|148549974, gi... - gi\|82738817\|ref\|ZP_00901641.1\| DNA mismatch repair protein [Pseudomonas putida F1], gi\|82714129\|gb\|E...	0.0	[1..633]	[2..633]
gi\|77380752, gi\|... - gi\|77456749\|ref\|YP_346254.1\| DNA mismatch repair protein [Pseudomonas fluorescens Pf0-1], gi\|7738075...	0.0	[4..633]	[7..635]
MUTL_AZOVD - DNA mismatch repair protein MutL OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=mutL PE=3 ... gi\|23104554, gi\|... - gi\|67157127\|ref\|ZP_00418489.1\| DNA mismatch repair protein [Azotobacter vinelandii AvOP], ref\|ZP_000...	0.0	[1..633]	[1..641]
gi\|63254544, gi\|... - gi\|66043837\|ref\|YP_233678.1\| DNA mismatch repair protein [Pseudomonas syringae pv. syringae B728a], ...	0.0	[4..633]	[20..648]
gi\|68348367, gi\|... - gi\|70734068\|ref\|YP_257708.1\| DNA mismatch repair protein [Pseudomonas fluorescens Pf-5], gi\|68348367...	0.0	[3..633]	[7..636]
gi\|71558618, gi\|... - gi\|71738065\|ref\|YP_272865.1\| DNA mismatch repair protein [Pseudomonas syringae pv. phaseolicola 1448...	0.0	[4..633]	[20..648]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAPRIQLL SPRLANQIAA GEVVERPASV AKELLENSLD AGSRRIDVEV EQGGIKLLRV  60
   61 RDDGRGIPAD DLPLALARHA TSKIRELEDL ERVMSLGFRG EALASISSVA RLTMTSRTAD 120
  121 AGEAWQVETE GRDMQPRVQP AAHPVGTSVE VRDLFFNTPA RRKFLRAEKT EFDHLQEVIK 180
  181 RLALARFDVA FHLRHN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.221849
Match:	1bknA
Description:	DNA mismatch repair protein MutL
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [197-633]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKTIFALHEA RDELARARRV GAVCGQAFLE QALPIEVERN GLHLWGWVGL PTFSRSQPDL  60
   61 QYFYVNGRMV RDKLVAHAVR QAYRDVLYNG RHPTFVLFFE VDPAVVDVNV HPTKHEVRFR 120
  121 DSRMVHDFLY GTLHRALGEV RPDDQLAPPG ATSLTEPRPT GAAAGEFGPQ GEMRLAESVL 180
  181 ESPAARVGWS GGSSASGGSS GYSAYTRPEA PPSLAEAGGA YKAYFAPLPA GEAPAALPES 240
  241 AQDIPPLGYA LAQLKGIYIL AENAHGLVLV DMHAAHERIT YERLKVAMAS EGLRGQPLLV 300
  301 PESIAVSERE ADCAEEHSSW FQRLGFELQR LGPESLAIRQ IPALLKQAEA TQLVRDVIAD 360
  361 LLEYGTSDRI QAHLNELLGT MACHGAVRAN RRLTLPEMNA LLRDMEITER SGQCNHGRPT 420
  421 WTQLGLDELD KLFLRGR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.154902
Match:	2cgeA
Description:	No description for 2cgeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits