YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218773930, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	67 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218773930, gi....

Description	E-value	Query Range	Subject Range
gi\|23105550, gi\|... - gi\|67154320\|ref\|ZP_00416065.1\| Protein of unknown function DUF466 [Azotobacter vinelandii AvOP], ref... gi\|226721064, gi... - gi\|67154320\|ref\|ZP_00416065.1\| Protein of unknown function DUF466 [Azotobacter vinelandii AvOP], gi\|...	113.0	[0..1]	[67..1]
gi\|194555486, gi... - gi\|84323363\|ref\|ZP_00971436.1\| COG2879: Uncharacterized small protein [Pseudomonas aeruginosa 2192],...	112.0	[0..1]	[67..1]
gi\|213966762, gi... - gi\|213966762\|ref\|ZP_03394913.1\| hypothetical protein PSPTOT1_0520 [Pseudomonas syringae pv. tomato T... gi\|237801449 - gi\|237801449\|ref\|ZP_04589910.1\| hypothetical protein Psyrpo1_21646 [Pseudomonas syringae pv. oryzae ... gi\|71555408, gi\|... - gi\|71734855\|ref\|YP_276446.1\| hypothetical protein PSPPH_4329 [Pseudomonas syringae pv. phaseolicola ... gi\|115265652 - gi\|115265652\|dbj\|BAF32913.1\| conserved hypothetical protein [Pseudomonas syringae pv. phaseolicola] gi\|115265598 - gi\|115265598\|dbj\|BAF32860.1\| conserved hypothetical protein [Pseudomonas syringae pv. actinidiae]	112.0	[0..1]	[67..1]
gi\|70732656, gi\|... - gi\|70732656\|ref\|YP_262419.1\| hypothetical protein PFL_5351 [Pseudomonas fluorescens Pf-5], gi\|683469...	112.0	[0..1]	[67..1]
gi\|62179202, gi\|... - gi\|62179202\|ref\|YP_215619.1\| hypothetical protein SC0632 [Salmonella enterica subsp. enterica serova... gi\|56128519, gi\|... - gi\|56414262\|ref\|YP_151337.1\| hypothetical protein SPA2133 [Salmonella enterica subsp. enterica serov... gi\|194450521, gi... - gi\|194450521\|ref\|YP_002044633.1\| hypothetical protein SeHA_C0713 [Salmonella enterica subsp. enteric... gi\|194446120, gi... - gi\|194446120\|ref\|YP_002039842.1\| hypothetical protein SNSL254_A0654 [Salmonella enterica subsp. ente... gi\|168818780, gi... - gi\|205344179\|gb\|EDZ30943.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|168465768, gi... - gi\|195631717\|gb\|EDX50237.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|197242371, gi... - gi\|197264116\|ref\|ZP_03164190.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197215033, gi... - gi\|197251330\|ref\|YP_002145575.1\| hypothetical protein SeAg_B0640 [Salmonella enterica subsp. enteric... gi\|194711281, gi... - gi\|194735779\|ref\|YP_002113719.1\| hypothetical protein SeSA_A0759 [Salmonella enterica subsp. enteric... gi\|194472493, gi... - gi\|194472493\|ref\|ZP_03078477.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|167990599, gi... - gi\|205330849\|gb\|EDZ17613.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|167550870, gi... - gi\|205324287\|gb\|EDZ12126.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|161364557, gi... - gi\|161615193\|ref\|YP_001589158.1\| hypothetical protein SPAB_02961 [Salmonella enterica subsp. enteric... gi\|205349815, gi... - gi\|205349815\|gb\|EDZ36446.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|205340323, gi... - gi\|205340323\|gb\|EDZ27087.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|168236588, gi... - gi\|197290239\|gb\|EDY29595.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|205333947, gi... - gi\|205333947\|gb\|EDZ20711.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|213852335 - gi\|213852335\|ref\|ZP_03381867.1\| hypothetical protein SentesT_05289 [Salmonella enterica subsp. enter... gi\|213646845 - gi\|213646845\|ref\|ZP_03376898.1\| hypothetical protein SentesTy_05770 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ybdD] [protein=putative cytoplasmic protein] [protein_id=YP_005236308.1] [location=664137..664... gi\|213622067 - gi\|213622067\|ref\|ZP_03374850.1\| hypothetical protein SentesTyp_32906 [Salmonella enterica subsp. ent... gi\|213582453 - gi\|213582453\|ref\|ZP_03364279.1\| hypothetical protein SentesTyph_15136 [Salmonella enterica subsp. en... gi\|25511991, gi\|... - gi\|25511991\|pir\|\|AC0576 conserved hypothetical protein STY0645 [imported] - Salmonella enterica subs... gi\|16419112, gi\|... - gi\|16763978\|ref\|NP_459593.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16419112\|... gi\|224582434, gi... - gi\|224582434\|ref\|YP_002636232.1\| hypothetical protein SPC_0613 [Salmonella enterica subsp. enterica ... gi\|213999497 - gi\|213999497\|ref\|ZP_03410232.1\| hypothetical protein Salmonellentericaenterica_01684 [Salmonella ent... gi\|213978231 - gi\|213978231\|ref\|ZP_03405490.1\| hypothetical protein Salmonellaentericaenterica_28508 [Salmonella en... gi\|204930504, gi... - gi\|204930504\|ref\|ZP_03221434.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|199603268, gi... - gi\|200390823\|ref\|ZP_03217434.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|29142667, gi\|... - gi\|29142667\|ref\|NP_806009.1\| hypothetical protein t2267 [Salmonella enterica subsp. enterica serovar... gi\|198242487, gi... - gi\|198242487\|ref\|YP_002214595.1\| hypothetical protein SeD_A0697 [Salmonella enterica subsp. enterica... gi\|16759560 - gi\|16759560\|ref\|NP_455177.1\| hypothetical protein STY0645 [Salmonella enterica subsp. enterica serov... gi\|197363185, gi... - gi\|197363185\|ref\|YP_002142822.1\| hypothetical protein SSPA1983 [Salmonella enterica subsp. enterica ... gi\|213424765 - gi\|213424765\|ref\|ZP_03357515.1\| hypothetical protein SentesTyphi_03061 [Salmonella enterica subsp. e... gi\|213163856 - gi\|213163856\|ref\|ZP_03349566.1\| hypothetical protein Salmoneentericaenterica_29166 [Salmonella enter... gi\|206707870, gi... - gi\|207856067\|ref\|YP_002242718.1\| hypothetical protein SEN0570 [Salmonella enterica subsp. enterica s... gi\|205271671, gi... - gi\|205351890\|ref\|YP_002225691.1\| hypothetical protein SG0605 [Salmonella enterica subsp. enterica se... gi\|238911552 - gi\|238911552\|ref\|ZP_04655389.1\| hypothetical protein SentesTe_10492 [Salmonella enterica subsp. ente...	111.0	[0..1]	[67..1]
gi\|126359973, gi... - gi\|167035625\|ref\|YP_001670856.1\| hypothetical protein PputGB1_4634 [Pseudomonas putida GB-1], gi\|166... tr\|I7C0S1\|I7C0S1... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_0813 PE=4 SV=1 tr\|E4R4X6\|E4R4X6... - Uncharacterized protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_4336 PE=4 SV=1 gi\|26991324, gi\|... - gi\|26991324\|ref\|NP_746749.1\| hypothetical protein PP_4640 [Pseudomonas putida KT2440], gi\|24986384\|g... gi\|82714843, gi\|... - gi\|82738066\|ref\|ZP_00900906.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714843\|g...	111.0	[0..1]	[67..1]
gi\|66047499, gi\|... - gi\|66047499\|ref\|YP_237340.1\| hypothetical protein Psyr_4272 [Pseudomonas syringae pv. syringae B728a...	110.0	[0..1]	[67..1]
gi\|77461103, gi\|... - gi\|77461103\|ref\|YP_350610.1\| hypothetical protein Pfl01_4882 [Pseudomonas fluorescens Pf0-1], gi\|773...	110.0	[0..1]	[67..1]
gi\|104780037, gi... - gi\|95109024\|emb\|CAK13720.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047800... gi\|95109024 - gi\|95109024\|emb\|CAK13720.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	110.0	[0..1]	[67..1]
gi\|124530201, gi... - gi\|124530201\|ref\|ZP_01700950.1\| protein of unknown function DUF466 [Escherichia coli B], gi\|12449936... gi\|81244456, gi\|... - gi\|82543045\|ref\|YP_406992.1\| hypothetical protein SBO_0460 [Shigella boydii Sb227], gi\|81244456\|gb\|A... YBDD_ECOL6 - Uncharacterized protein ybdD OS=Escherichia coli O6 GN=ybdD PE=4 SV=1 gi\|75194784, gi\|... - gi\|75194784\|ref\|ZP_00704854.1\| COG2879: Uncharacterized small protein [Escherichia coli HS], gi\|1571... gi\|91209646, gi\|... - gi\|91209646\|ref\|YP_539632.1\| hypothetical protein UTI89_C0601 [Escherichia coli UTI89], gi\|91071220\|... gi\|170021042, gi... - gi\|170021042\|ref\|YP_001725996.1\| hypothetical protein EcolC_3045 [Escherichia coli ATCC 8739], gi\|16... gi\|75229515, gi\|... - gi\|75229515\|ref\|ZP_00716062.1\| COG2879: Uncharacterized small protein [Escherichia coli B7A], gi\|191... gi\|38703880 - gi\|38703880\|ref\|NP_944508.1\| hypothetical protein ECs5382 [Escherichia coli O157:H7 str. Sakai] gi\|168798156, gi... - gi\|189379333\|gb\|EDU97749.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|187429504, gi... - gi\|75177498\|ref\|ZP_00697579.1\| COG2879: Uncharacterized small protein [Shigella boydii BS512], gi\|18... gi\|110640830, gi... - gi\|110640830\|ref\|YP_668558.1\| hypothetical protein ECP_0631 [Escherichia coli 536], gi\|110342422\|gb\|... gi\|170517556, gi... - gi\|170679838\|ref\|YP_001742717.1\| hypothetical protein EcSMS35_0619 [Escherichia coli SMS-3-5], gi\|17... gi\|157077722, gi... - gi\|75189639\|ref\|ZP_00702906.1\| COG2879: Uncharacterized small protein [Escherichia coli E24377A], gi... gi\|110804589, gi... - gi\|110804589\|ref\|YP_688109.1\| hypothetical protein SFV_0547 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|170080281, gi... - gi\|170080281\|ref\|YP_001729601.1\| hypothetical protein ECDH10B_0667 [Escherichia coli str. K-12 subst... gi\|74311134, gi\|... - gi\|74311134\|ref\|YP_309553.1\| hypothetical protein SSON_0550 [Shigella sonnei Ss046], gi\|73854611\|gb\|... gi\|195936147 - gi\|195936147\|ref\|ZP_03081529.1\| hypothetical protein EscherichcoliO157_06731 [Escherichia coli O157:... gi\|82775878, gi\|... - gi\|82775878\|ref\|YP_402225.1\| hypothetical protein SDY_0530 [Shigella dysenteriae Sd197], gi\|81240026... gi\|170767975, gi... - gi\|170767975\|ref\|ZP_02902428.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|191172263, gi... - gi\|75240757\|ref\|ZP_00724664.1\| COG2879: Uncharacterized small protein [Escherichia coli F11], gi\|191... gi\|208816283, gi... - gi\|208816283\|ref\|ZP_03257462.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|193063423, gi... - gi\|75258663\|ref\|ZP_00730070.1\| COG2879: Uncharacterized small protein [Escherichia coli E22], gi\|193... gi\|4062215, gi\|8... - gi\|89107466\|ref\|AP_001246.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|208806539, gi... - gi\|208806539\|ref\|ZP_03248876.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|188017599, gi... - gi\|188017599\|gb\|EDU55721.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168760255, gi... - gi\|189369128\|gb\|EDU87544.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189358121, gi... - gi\|189358121\|gb\|EDU76540.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|83570427, gi\|... - gi\|83570427\|ref\|ZP_00921872.1\| COG2879: Uncharacterized small protein [Shigella dysenteriae 1012], g... gi\|187769683, gi... - gi\|187769683\|gb\|EDU33527.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|83586965, gi\|... - gi\|83586965\|ref\|ZP_00925595.1\| COG2879: Uncharacterized small protein [Escherichia coli 101-1], gi\|1... gi\|189360858, gi... - gi\|189360858\|gb\|EDU79277.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189373765, gi... - gi\|189373765\|gb\|EDU92181.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168779086, gi... - gi\|189003039\|gb\|EDU72025.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... YBDD_SHIFL - Uncharacterized protein YbdD OS=Shigella flexneri GN=ybdD PE=4 SV=1 EG11107 - DUF466 family protein / DUF466 family protein, function unknown gi\|24050752, gi\|... - gi\|24111944\|ref\|NP_706454.1\| hypothetical protein SF0513 [Shigella flexneri 2a str. 301], gi\|2405075... YBDD_ECOL6 - Uncharacterized protein YbdD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybdD ... gi\|38703880 - gi\|38703880\|ref\|NP_944508.1\| hypothetical protein ECs5382 [Escherichia coli O157:H7] gi\|227838506, gi... - gi\|227884420\|ref\|ZP_04002225.1\| protein of hypothetical function DUF466 [Escherichia coli 83972], gi... gi\|226898637, gi... - gi\|237707427\|ref\|ZP_04537908.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238899878, gi... - gi\|238899878\|ref\|YP_002925674.1\| hypothetical protein BWG_0472 [Escherichia coli BW2952], gi\|2388605... gi\|242376374, gi... - gi\|251784101\|ref\|YP_002998405.1\| hypothetical protein B21_00555 [Escherichia coli BL21], gi\|24237637... gi\|254287467, gi... - gi\|254287467\|ref\|YP_003053215.1\| hypothetical protein ECD_00566 [Escherichia coli BL21(DE3)], gi\|253... gi\|254160679, gi... - gi\|254160679\|ref\|YP_003043787.1\| hypothetical protein ECB_00566 [Escherichia coli B str. REL606], gi... gi\|254791766, gi... - gi\|254791766\|ref\|YP_003076603.1\| hypothetical protein ECSP_0653 [Escherichia coli O157:H7 str. TW143... YBDD_ECOLI - Hypothetical protein ybdD - Escherichia coli gi\|218694040, gi... - gi\|218694040\|ref\|YP_002401707.1\| hypothetical protein EC55989_0591 [Escherichia coli 55989], gi\|2183... gi\|218425988, gi... - gi\|218688424\|ref\|YP_002396636.1\| hypothetical protein ECED1_0597 [Escherichia coli ED1a], gi\|2184259... gi\|218431031, gi... - gi\|218703934\|ref\|YP_002411453.1\| hypothetical protein ECUMN_0693 [Escherichia coli UMN026], gi\|21843... gi\|218698973, gi... - gi\|218698973\|ref\|YP_002406602.1\| hypothetical protein ECIAI39_0576 [Escherichia coli IAI39], gi\|2183... gi\|209159496, gi... - gi\|209398096\|ref\|YP_002269233.1\| hypothetical protein ECH74115_0684 [Escherichia coli O157:H7 str. E... gi\|208737192, gi... - gi\|208822999\|ref\|ZP_03263317.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|215263714, gi... - gi\|215485642\|ref\|YP_002328073.1\| hypothetical protein E2348C_0501 [Escherichia coli O127:H6 str. E23... gi\|209911116, gi... - gi\|209917857\|ref\|YP_002291941.1\| hypothetical protein ECSE_0666 [Escherichia coli SE11], gi\|20991111... gi\|218357354, gi... - gi\|218549813\|ref\|YP_002383604.1\| hypothetical protein EFER_2495 [Escherichia fergusonii ATCC 35469],... gi\|217322703, gi... - gi\|217326482\|ref\|ZP_03442566.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218557540, gi... - gi\|218557540\|ref\|YP_002390453.1\| hypothetical protein ECS88_0638 [Escherichia coli S88], gi\|21836430... gi\|218553142, gi... - gi\|218553142\|ref\|YP_002386055.1\| hypothetical protein ECIAI1_0583 [Escherichia coli IAI1], gi\|218359... EG11107 - DUF466 family protein / DUF466 family protein, function unknown	110.0	[0..1]	[67..1]

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Predicted Domain #1

Region A:
Residues: [1-67]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNDLSRMGK YLGQAARMLV GMPDYDTYVE HMRNKHPDKP VMTYEEFFRE RQEARYGGGK  60
   61 GRPIRCC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.346787
Match:	PF04328.4
Description:	No description for PF04328.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits