YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218770445, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	481 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218770445, gi....

Description	E-value	Query Range	Subject Range
gi\|94793, gi\|151504 - pir\|\|A38598 mannose-6-phosphate isomerase (EC 5.3.1.8) / mannose-1-phosphate guanylyltransferase (GD...	0.0	[1..481]	[1..481]
gi\|152988233, gi... - gi\|94415309\|ref\|ZP_01295153.1\| hypothetical protein PaerP_01002862 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..481]	[1..481]
gi\|77975891, gi\|... - gi\|77975891\|ref\|ZP_00831425.1\| COG0836: Mannose-1-phosphate guanylyltransferase [Yersinia frederikse...	0.0	[1..469]	[2..471]
gi\|46019524 - gi\|46019524\|emb\|CAE53852.1\| mannose-1-phosphate guanylytransferase, ManC protein [Yersinia enterocol...	0.0	[1..469]	[3..472]
gi\|66044305, gi\|... - gi\|66044305\|ref\|YP_234146.1\| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase [...	0.0	[1..481]	[1..483]
gi\|77381179, gi\|... - gi\|77457176\|ref\|YP_346681.1\| mannose-1-phosphate guanylyltransferase (GDP) [Pseudomonas fluorescens ...	0.0	[1..480]	[1..479]
gi\|95112499 - gi\|95112499\|emb\|CAK17226.1\| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Al... gi\|95112499, gi\|... - gi\|95112499\|emb\|CAK17226.1\| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Al...	0.0	[1..480]	[1..480]
gi\|71555316, gi\|... - gi\|71734763\|ref\|YP_273375.1\| alginate biosynthesis protein AlgA [Pseudomonas syringae pv. phaseolico...	0.0	[1..481]	[1..483]
tr\|I7BBY9\|I7BBY9... - Mannose-1-phosphate guanylyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_3156 PE=3 SV=1 ALGA_PSEPK - Alginate biosynthesis protein AlgA OS=Pseudomonas putida (strain KT2440) GN=algA PE=3 SV=1 gi\|148549650, gi... - gi\|82737908\|ref\|ZP_00900751.1\| Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase... tr\|E4R4S6\|E4R4S6... - AlgA OS=Pseudomonas putida (strain BIRD-1) GN=algA PE=3 SV=1	0.0	[1..480]	[2..481]
gi\|196111565, gi... - gi\|88795878\|ref\|ZP_01111567.1\| mannose-1-phosphate guanylyltransferase [Alteromonas macleodii 'Deep ...	0.0	[1..471]	[1..468]

Back

Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPVILSGGS GSRLWPLSRK QYPKQFLALT GDDTLFQQTI KRLAFDGMQA PLLVCNKEHR  60
   61 FIVQEQLEAQ NLASQAILLE PFGRNTAPAV AIAAMKLVAE GRDELLLILP ADHVIEDQRA 120
  121 FQQALALATN AAEKGEMVLF GIPASRPETG YGYIRASADA QLPEGVSRVQ SFVEKPDEAR 180
  181 AREFVAAGGY YWNSGMFLFR ASRYLEELKK HDADIYDTCL LALERSQHDG DLVNIDAATF 240
  241 ECCPDNSIDY AVMEKTSRAC VVPLSAGWND VGSWSSIWDV HAKDANGNVT KGDVLVHDSH 300
  301 NCLVHGNGKL VSVIGLEDIV VVETKDAMMI AHKDRVQDVK HVVKDLDAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.30103
Match:	2cu2A
Description:	No description for 2cu2A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.25720704697246	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.04393180556087	bayes_pls_golite062009
transferase activity	1.67251862595728	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.51711005399931	bayes_pls_golite062009
3-deoxy-manno-octulosonate cytidylyltransferase activity	1.31116473821178	bayes_pls_golite062009
cytidylyltransferase activity	1.30540294475078	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	1.21894113759929	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.696745721981411	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
uridylyltransferase activity	0.54930147038803	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.48277064848483	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.38929738612511	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.280335197569099	bayes_pls_golite062009
glucose-1-phosphate thymidylyltransferase activity	0.204810937394121	bayes_pls_golite062009
guanylyltransferase activity	0.14847697203788	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.10541627748542	bayes_pls_golite062009
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00302319544700058	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [350-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRSETQNHCE VYRPWGSYDS VDMGGRFQVK HITVKPGARL SLQMHHHRAE HWIVVSGTAQ  60
   61 VTCDDKTFLL TENQSTYIPI ASVHRLANPG KIPLEIIEVQ SGSYLGEDDI ERLEDVYGRT 120
  121 AEPALQVVAG SR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.39794
Match:	2oa2A
Description:	No description for 2oa2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: