YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195938218
Organism:	Escherichia coli O157:H7 str. EC4024
Length:	65 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195938218.

Description	E-value	Query Range	Subject Range
gi\|24158901 - gi\|24158901\|pdb\|1LV3\|A Chain A, Solution Nmr Structure Of Zinc Finger Protein Yacg From Escherichia ...	107.0	[0..1]	[65..4]
gi\|150840012, gi... - gi\|75430206\|ref\|ZP_00732687.1\| Dephospho-CoA kinase [Actinobacillus succinogenes 130Z], gi\|74276641\|...	107.0	[0..1]	[62..216]
gi\|83569679 - gi\|83569679\|ref\|ZP_00921129.1\| COG3024: Uncharacterized protein conserved in bacteria [Shigella dyse...	105.0	[0..1]	[65..1]
gi\|37680968, gi\|... - gi\|37680968\|ref\|NP_935577.1\| zinc-binding protein [Vibrio vulnificus YJ016], gi\|37199718\|dbj\|BAC9554...	102.0	[0..1]	[62..8]
Y3643_PHOLL, Y0E... - UPF0243 zinc-binding protein plu3643 OS=Photorhabdus luminescens subsp. laumondii GN=plu3643 PE=3 SV... YACG_PHOLL - DNA gyrase inhibitor YacG OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556...	101.0	[0..1]	[65..1]
YACG_PHOPR - DNA gyrase inhibitor YacG OS=Photobacterium profundum (strain SS9) GN=yacG PE=3 SV=1 YACG_PHOPR, Y320... - DNA gyrase inhibitor YacG OS=Photobacterium profundum GN=yacG PE=3 SV=1, UPF0243 zinc-binding protei...	99.0	[0..2]	[62..13]
gi\|90580237, gi\|... - gi\|90580237\|ref\|ZP_01236044.1\| zinc-binding protein [Vibrio angustum S14], gi\|90438539\|gb\|EAS63723.1...	98.0	[0..2]	[62..8]
Y1619_VIBVU, YAC... - (Q8DC30) Hypothetical UPF0243 zinc-binding protein VV11619, DNA gyrase inhibitor YacG OS=Vibrio vuln... YACG_VIBVU - DNA gyrase inhibitor YacG OS=Vibrio vulnificus (strain CMCP6) GN=yacG PE=3 SV=2	98.0	[0..1]	[62..1]
gi\|90326962, gi\|... - gi\|90411984\|ref\|ZP_01219991.1\| zinc-binding protein [Photobacterium profundum 3TCK], gi\|90326962\|gb\|...	98.0	[0..2]	[62..8]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETITVNCP TCGKTVVWGE ISPFRPFCSK RCQLIDLGEW AAEEKRIPSS GDLSESDDWS  60
   61 EEPKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.154902
Match:	1lv3A
Description:	Hypothetical zinc finger protein YacG
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits