YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186896850, gi...
Organism:	Yersinia pseudotuberculosis PB1/+
Length:	435 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186896850, gi....

Description	E-value	Query Range	Subject Range
gi\|157080018, gi... - gi\|75187864\|ref\|ZP_00701131.1\| COG3025: Uncharacterized conserved protein [Escherichia coli E24377A]... gi\|218696758, gi... - gi\|218696758\|ref\|YP_002404425.1\| putative adenylate cyclase [Escherichia coli 55989], gi\|218353490\|e...	0.0	[1..435]	[1..433]
gi\|24114354, gi\|... - gi\|24114354\|ref\|NP_708864.1\| hypothetical protein SF3095 [Shigella flexneri 2a str. 301], gi\|2405351... gi\|30064402, gi\|... - gi\|30064402\|ref\|NP_838573.1\| hypothetical protein S3300 [Shigella flexneri 2a str. 2457T], gi\|300426...	0.0	[1..435]	[1..433]
gi\|157162527, gi... - gi\|75197007\|ref\|ZP_00707077.1\| COG3025: Uncharacterized conserved protein [Escherichia coli HS], gi\|...	0.0	[1..435]	[1..433]
gi\|169753622, gi... - gi\|170018694\|ref\|YP_001723648.1\| adenylate cyclase [Escherichia coli ATCC 8739], gi\|169753622\|gb\|ACA... gi\|218701825, gi... - gi\|218701825\|ref\|YP_002409454.1\| putative adenylate cyclase [Escherichia coli IAI39], gi\|218371811\|e... gi\|169890432, gi... - gi\|170082597\|ref\|YP_001731917.1\| adenylate cyclase [Escherichia coli str. K-12 substr. DH10B], gi\|16... EG11603 - inorganic triphosphatase / Inorganic triphosphatase YGIF_ECOLI - Hypothetical protein ygiF (ORFXE) - Escherichia coli gi\|124502139, gi... - gi\|124526035\|ref\|ZP_01698040.1\| adenylate cyclase [Escherichia coli B], gi\|124502139\|gb\|EAY49599.1\| ... gi\|194424332, gi... - gi\|83587508\|ref\|ZP_00926135.1\| COG3025: Uncharacterized conserved protein [Escherichia coli 101-1], ... gi\|238902165, gi... - gi\|238902165\|ref\|YP_002927961.1\| putative adenylate cyclase [Escherichia coli BW2952], gi\|238862133\|... gi\|89109824, gi\|... - gi\|89109824\|ref\|AP_003604.1\| predicted adenylate cyclase [Escherichia coli str. K-12 substr. W3110],... gi\|242378604, gi... - gi\|251786331\|ref\|YP_003000635.1\| hypothetical protein B21_02874 [Escherichia coli BL21], gi\|24237860... gi\|253323154, gi... - gi\|254289751\|ref\|YP_003055499.1\| predicted adenylate cyclase [Escherichia coli BL21(DE3)], gi\|253979... EG11603 - inorganic triphosphatase / Inorganic triphosphatase gi\|253974902, gi... - gi\|254163001\|ref\|YP_003046109.1\| predicted adenylate cyclase [Escherichia coli B str. REL606], gi\|25...	0.0	[1..435]	[1..433]
gi\|205331254, gi... - gi\|205331254\|gb\|EDZ18018.1\| adenylate cyclase [Salmonella enterica subsp. enterica serovar 4,[5],12:... gi\|16421759, gi\|... - gi\|16766502\|ref\|NP_462117.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421759\|... lcl\|NC_016856.1_... - [gene=ygiF] [protein=putative cytoplasmic protein] [protein_id=YP_005239377.1] [location=complement(...	0.0	[1..435]	[1..433]
gi\|26249633, gi\|... - gi\|26249633\|ref\|NP_755673.1\| hypothetical protein c3802 [Escherichia coli CFT073], gi\|26110061\|gb\|AA...	0.0	[1..435]	[10..442]
gi\|213645910 - gi\|213645910\|ref\|ZP_03375963.1\| hypothetical protein SentesTy_00284 [Salmonella enterica subsp. ente... gi\|214001825 - gi\|214001825\|ref\|ZP_03412560.1\| hypothetical protein Salmonellentericaenterica_15866 [Salmonella ent... gi\|213027466 - gi\|213027466\|ref\|ZP_03341913.1\| hypothetical protein Salmonelentericaenterica_35848 [Salmonella ente... gi\|213161053 - gi\|213161053\|ref\|ZP_03346763.1\| hypothetical protein Salmoneentericaenterica_13813 [Salmonella enter... gi\|213419253 - gi\|213419253\|ref\|ZP_03352319.1\| hypothetical protein Salmonentericaenterica_16099 [Salmonella enteri... gi\|213425621 - gi\|213425621\|ref\|ZP_03358371.1\| hypothetical protein SentesTyphi_08180 [Salmonella enterica subsp. e... gi\|16761976 - gi\|16761976\|ref\|NP_457593.1\| hypothetical protein STY3381 [Salmonella enterica subsp. enterica serov... gi\|25367812, gi\|... - gi\|25367812\|pir\|\|AI0891 conserved hypothetical protein STY3381 [imported] - Salmonella enterica subs... gi\|29139097, gi\|... - gi\|29143463\|ref\|NP_806805.1\| hypothetical protein t3122 [Salmonella enterica subsp. enterica serovar...	0.0	[1..435]	[1..433]
gi\|188493955, gi... - gi\|75511262\|ref\|ZP_00733960.1\| COG3025: Uncharacterized conserved protein [Escherichia coli 53638], ...	0.0	[1..435]	[1..433]
gi\|82778387, gi\|... - gi\|82778387\|ref\|YP_404736.1\| hypothetical protein SDY_3237 [Shigella dysenteriae Sd197], gi\|81242535...	0.0	[1..435]	[1..433]
gi\|13363410, gi\|... - gi\|15833191\|ref\|NP_311964.1\| hypothetical protein ECs3937 [Escherichia coli O157:H7], gi\|13363410\|db... gi\|209759360, gi... - pir\|\|H85965 hypothetical protein ygiF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|208738793, gi... - gi\|208818670\|ref\|ZP_03258990.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4042], gi\|2087387... gi\|12517630, gi\|... - gi\|15803596\|ref\|NP_289629.1\| hypothetical protein Z4407 [Escherichia coli O157:H7 EDL933], gi\|125176... gi\|209395808, gi... - gi\|209395808\|ref\|YP_002272526.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4115], gi\|209157... gi\|217319190, gi... - gi\|217326823\|ref\|ZP_03442906.1\| adenylate cyclase [Escherichia coli O157:H7 str. TW14588], gi\|217319... gi\|168785926, gi... - gi\|189373979\|gb\|EDU92395.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC869], gi\|168785926\|re... gi\|195937198 - gi\|195937198\|ref\|ZP_03082580.1\| hypothetical protein EscherichcoliO157_12216 [Escherichia coli O157:... gi\|254594405, gi... - gi\|254795005\|ref\|YP_003079842.1\| predicted adenylate cyclase [Escherichia coli O157:H7 str. TW14359]... gi\|208725835, gi... - gi\|208806034\|ref\|ZP_03248371.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4206], gi\|2087258... gi\|13363410, gi\|... - gi\|15833191\|ref\|NP_311964.1\| hypothetical protein ECs3937 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208734468, gi... - gi\|208813191\|ref\|ZP_03254520.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4045], gi\|2087344... gi\|168760213, gi... - gi\|189369436\|gb\|EDU87852.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4501], gi\|168760213\|r... gi\|168767075, gi... - gi\|189363621\|gb\|EDU82040.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4486], gi\|168767075\|r... gi\|168773291, gi... - gi\|187770755\|gb\|EDU34599.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4196], gi\|168773291\|r... gi\|189000579, gi... - gi\|189000579\|gb\|EDU69565.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4076], gi\|168781928\|r... gi\|168747438, gi... - gi\|188017858\|gb\|EDU55980.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4113], gi\|168747438\|r... gi\|189358442, gi... - gi\|189358442\|gb\|EDU76861.1\| adenylate cyclase [Escherichia coli O157:H7 str. EC4401], gi\|168754022\|r...	0.0	[1..435]	[1..433]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVEIELKFI ATPAAIAALP EWIESQKNQH FPPQTLANIY FDTADKRLRQ NDIGLRIRGY  60
   61 DGRYEMTVKT GGKVVGGLHQ RPEYNVDIDS DQLDLARFPQ DIWPEGWAVD LLQAELQPLF 120
  121 RTDFTREKWV ITYGESEIEL ALDQGSISAD TLSEPLSEIE LELKQGTQGD LLALAAELAK 180
  181 MGGLRQSNLS KAARGYHLAQ GNPPRELRPF LVFQPVAKST VEQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	2jmuA
Description:	No description for 2jmuA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.413478660826501	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [225-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGLESILE HWQYHEELWL RGEPAAKTMI IDALAMVRQS LAIFGGLVPR KASTELRALL  60
   61 IALEPQLEPK SVDAALLCYS VDYLKCKLAL TSWLITAGWR PFMDAKAQAK FDGSFKRFCD 120
  121 IMLSRSAADL KEAFGHNLDD DGYLAQLPRL NRQLIAFQLL SGFYPQSEWH PYIDAWFGLQ 180
  181 QAIMARQGHW RDTARKEALS QAAFWLNGAV R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: