YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|169751954, gi...
Organism:	Yersinia pseudotuberculosis YPIII
Length:	51 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|169751954, gi....

Description	E-value	Query Range	Subject Range
gi\|21957804, gi\|... - gi\|22124962\|ref\|NP_668385.1\| hypothetical protein y1055 [Yersinia pestis KIM], gi\|21957804\|gb\|AAM846... gi\|45440652, gi\|... - gi\|45440652\|ref\|NP_992191.1\| hypothetical protein YP_0803 [Yersinia pestis biovar Microtus str. 9100...	6.0E-13	[1..51]	[5..55]
gi\|36787139, gi\|... - gi\|37527704\|ref\|NP_931049.1\| hypothetical protein plu3844 [Photorhabdus luminescens subsp. laumondii...	3.0E-12	[1..48]	[1..48]
gi\|238791465, gi... - gi\|77979362\|ref\|ZP_00834781.1\| hypothetical protein YintA_01000846 [Yersinia intermedia ATCC 29909],...	4.0E-12	[1..51]	[1..51]
gi\|238720625, gi... - gi\|77962353\|ref\|ZP_00826174.1\| hypothetical protein YmolA_01001382 [Yersinia mollaretii ATCC 43969],...	3.0E-11	[1..51]	[1..51]
gi\|167990466, gi... - gi\|205330958\|gb\|EDZ17722.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167550994, gi... - gi\|205324282\|gb\|EDZ12121.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161615323, gi... - gi\|161615323\|ref\|YP_001589288.1\| hypothetical protein SPAB_03093 [Salmonella enterica subsp. enteric... gi\|56414365, gi\|... - gi\|56414365\|ref\|YP_151440.1\| hypothetical protein SPA2242 [Salmonella enterica subsp. enterica serov... gi\|238911390 - gi\|238911390\|ref\|ZP_04655227.1\| hypothetical protein SentesTe_09660 [Salmonella enterica subsp. ente... gi\|197262599, gi... - gi\|197262599\|ref\|ZP_03162673.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197212339, gi... - gi\|197248636\|ref\|YP_002145461.1\| hypothetical protein SeAg_B0521 [Salmonella enterica subsp. enteric... gi\|194737252, gi... - gi\|194737252\|ref\|YP_002113511.1\| hypothetical protein SeSA_A0540 [Salmonella enterica subsp. enteric... gi\|194468642, gi... - gi\|194468642\|ref\|ZP_03074626.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205271569, gi... - gi\|205351788\|ref\|YP_002225589.1\| hypothetical protein SG0490 [Salmonella enterica subsp. enterica se... gi\|204930523, gi... - gi\|204930523\|ref\|ZP_03221453.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197939667, gi... - gi\|198245151\|ref\|YP_002214433.1\| hypothetical protein SeD_A0524 [Salmonella enterica subsp. enterica... gi\|197363285, gi... - gi\|197363285\|ref\|YP_002142922.1\| hypothetical protein SSPA2085 [Salmonella enterica subsp. enterica ... gi\|168261082, gi... - gi\|205349937\|gb\|EDZ36568.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205340355, gi... - gi\|205340355\|gb\|EDZ27119.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197289468, gi... - gi\|197289468\|gb\|EDY28831.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168231470, gi... - gi\|205333988\|gb\|EDZ20752.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194447689, gi... - gi\|194447689\|ref\|YP_002044513.1\| hypothetical protein SeHA_C0584 [Salmonella enterica subsp. enteric... gi\|194442921, gi... - gi\|194442921\|ref\|YP_002039723.1\| hypothetical protein SNSL254_A0530 [Salmonella enterica subsp. ente... gi\|168818904, gi... - gi\|205343937\|gb\|EDZ30701.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168465576, gi... - gi\|195631909\|gb\|EDX50429.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16501752, gi\|... - gi\|25511977\|pir\|\|AC0562 conserved hypothetical protein STY0524 [imported] - Salmonella enterica subs... gi\|214002419 - gi\|214002419\|ref\|ZP_03413154.1\| hypothetical protein Salmonellentericaenterica_19396 [Salmonella ent... gi\|213854535 - gi\|213854535\|ref\|ZP_03382775.1\| hypothetical protein SentesT_10639 [Salmonella enterica subsp. enter... gi\|16759460 - gi\|16759460\|ref\|NP_455077.1\| hypothetical protein STY0524 [Salmonella enterica subsp. enterica serov... gi\|16763860, gi\|... - gi\|16763860\|ref\|NP_459475.1\| hypothetical protein STM0480 [Salmonella typhimurium LT2], gi\|16418988\|... gi\|29138400, gi\|... - gi\|29142768\|ref\|NP_806110.1\| hypothetical protein t2380 [Salmonella enterica subsp. enterica serovar... gi\|213419542 - gi\|213419542\|ref\|ZP_03352608.1\| hypothetical protein Salmonentericaenterica_17781 [Salmonella enteri... gi\|213162894 - gi\|213162894\|ref\|ZP_03348604.1\| hypothetical protein Salmoneentericaenterica_23876 [Salmonella enter... gi\|213021351 - gi\|213021351\|ref\|ZP_03335798.1\| hypothetical protein Salmonelentericaenterica_00586 [Salmonella ente... gi\|206707762, gi... - gi\|207855959\|ref\|YP_002242610.1\| hypothetical protein SEN0461 [Salmonella enterica subsp. enterica s... gi\|213649088 - gi\|213649088\|ref\|ZP_03379141.1\| hypothetical protein SentesTy_18483 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ybaM] [protein=hypothetical protein] [protein_id=YP_005236178.1] [location=complement(539629..... gi\|213622909 - gi\|213622909\|ref\|ZP_03375692.1\| hypothetical protein SentesTyp_37582 [Salmonella enterica subsp. ent... gi\|213582628 - gi\|213582628\|ref\|ZP_03364454.1\| hypothetical protein SentesTyph_16063 [Salmonella enterica subsp. en... gi\|213427139 - gi\|213427139\|ref\|ZP_03359889.1\| hypothetical protein SentesTyphi_16920 [Salmonella enterica subsp. e...	3.0E-11	[1..51]	[1..51]
gi\|224582317, gi... - gi\|224582317\|ref\|YP_002636115.1\| hypothetical protein SPC_0494 [Salmonella enterica subsp. enterica ... gi\|62179091, gi\|... - gi\|62179091\|ref\|YP_215508.1\| hypothetical protein SC0521 [Salmonella enterica subsp. enterica serova...	6.0E-11	[1..51]	[1..51]
gi\|238715452, gi... - gi\|77957230\|ref\|ZP_00821291.1\| hypothetical protein YberA_01002551 [Yersinia bercovieri ATCC 43970],...	8.0E-11	[1..51]	[1..51]
gi\|238723993, gi... - gi\|77974268\|ref\|ZP_00829809.1\| hypothetical protein YfreA_01001848 [Yersinia frederiksenii ATCC 3364...	8.0E-11	[1..51]	[1..51]
gi\|110614041, gi... - gi\|110804493\|ref\|YP_688013.1\| hypothetical protein SFV_0439 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|30040210, gi\|... - gi\|30061966\|ref\|NP_836137.1\| hypothetical protein S0418 [Shigella flexneri 2a str. 2457T], gi\|300402... gi\|24050644, gi\|... - gi\|24111849\|ref\|NP_706359.1\| hypothetical protein SF0411 [Shigella flexneri 2a str. 301], gi\|2405064...	2.0E-10	[1..50]	[1..50]
gi\|209778434, gi... - pir\|\|C85544 hypothetical protein Z0583 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|82775803, gi\|... - gi\|82775803\|ref\|YP_402150.1\| hypothetical protein SDY_0453 [Shigella dysenteriae Sd197], gi\|81239951... gi\|12513333, gi\|... - gi\|15800195\|ref\|NP_286207.1\| hypothetical protein Z0583 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|209400374, gi... - gi\|209400374\|ref\|YP_002269116.1\| hypothetical protein ECH74115_0556 [Escherichia coli O157:H7 str. E... gi\|13359976, gi\|... - gi\|15829773\|ref\|NP_308546.1\| hypothetical protein ECs0519 [Escherichia coli O157:H7], gi\|13359976\|db... gi\|217322701, gi... - gi\|217326480\|ref\|ZP_03442564.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218703749, gi... - gi\|218703749\|ref\|YP_002411268.1\| hypothetical protein ECUMN_0505 [Escherichia coli UMN026], gi\|21843... gi\|195936029 - gi\|195936029\|ref\|ZP_03081411.1\| hypothetical protein EscherichcoliO157_06116 [Escherichia coli O157:... gi\|208808408, gi... - gi\|208808408\|ref\|ZP_03250745.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208733065, gi... - gi\|208816417\|ref\|ZP_03257596.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|13359976, gi\|... - gi\|15829773\|ref\|NP_308546.1\| hypothetical protein ECs0519 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208823005, gi... - gi\|208823005\|ref\|ZP_03263323.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|168777163, gi... - gi\|187767536\|gb\|EDU31380.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189003059, gi... - gi\|189003059\|gb\|EDU72045.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168786318, gi... - gi\|189373568\|gb\|EDU91984.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|254591049, gi... - gi\|254791649\|ref\|YP_003076486.1\| hypothetical protein ECSP_0533 [Escherichia coli O157:H7 str. TW143... gi\|189379371, gi... - gi\|189379371\|gb\|EDU97787.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168747857, gi... - gi\|188017624\|gb\|EDU55746.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189357990, gi... - gi\|189357990\|gb\|EDU76409.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168760378, gi... - gi\|189369201\|gb\|EDU87617.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168768422, gi... - gi\|189362491\|gb\|EDU80910.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g...	2.0E-10	[1..49]	[1..49]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEQAPPEL QLAVDLIYLL ECNEIAPETA LAALAIVQLD YQRKLRHKES D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.518	a.32.1	Transcription factor IIA (TFIIA), alpha-helical domain
View	Download	0.512	a.32.1	Transcription factor IIA (TFIIA), alpha-helical domain
View	Download	0.473	a.32.1	Transcription factor IIA (TFIIA), alpha-helical domain
View	Download	0.435	a.2.10	Epsilon subunit of F1F0-ATP synthase C-terminal domain
View	Download	0.421	a.32.1	Transcription factor IIA (TFIIA), alpha-helical domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits