YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166958915, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166958915, gi....

Description	E-value	Query Range	Subject Range
gi\|205352812, gi... - gi\|205352812\|ref\|YP_002226613.1\| hypothetical protein SG1640 [Salmonella enterica subsp. enterica se... gi\|206708824, gi... - gi\|207857021\|ref\|YP_002243672.1\| hypothetical protein SEN1571 [Salmonella enterica subsp. enterica s... gi\|197939386, gi... - gi\|198244870\|ref\|YP_002215661.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Dublin st... gi\|200390738, gi... - gi\|200390738\|ref\|ZP_03217349.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Virchow st... gi\|197212111, gi... - gi\|197248408\|ref\|YP_002146567.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Agona str... gi\|197242556, gi... - gi\|197264301\|ref\|ZP_03164375.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|194409151, gi... - gi\|194450847\|ref\|YP_002045514.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Heidelber... gi\|194468784, gi... - gi\|194468784\|ref\|ZP_03074768.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Kentucky s... lcl\|NC_016856.1_... - [gene=ydgH] [protein=hypothetical protein] [protein_id=YP_005237354.1] [location=complement(1564202.... gi\|168819233, gi... - gi\|205343724\|gb\|EDZ30488.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|194445904, gi... - gi\|194445904\|ref\|YP_002040725.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Newport s... gi\|168240997, gi... - gi\|205339497\|gb\|EDZ26261.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|195634107, gi... - gi\|195634107\|gb\|EDX52459.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|167994455, gi... - gi\|205327670\|gb\|EDZ14434.1\| protein YdgH [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|168229856, gi... - gi\|205335348\|gb\|EDZ22112.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|161363463, gi... - gi\|161614099\|ref\|YP_001588064.1\| hypothetical protein SPAB_01838 [Salmonella enterica subsp. enteric... gi\|16419997, gi\|... - gi\|16764823\|ref\|NP_460438.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16419997\|...	466.0	[0..1]	[317..1]
gi\|25343459, gi\|... - gi\|25343459\|pir\|\|AC0683 probable exported protein STY1590 [imported] - Salmonella enterica subsp. en... gi\|29137479, gi\|... - gi\|29141851\|ref\|NP_805193.1\| hypothetical protein t1398 [Salmonella enterica subsp. enterica serovar... gi\|213999334 - gi\|213999334\|ref\|ZP_03410069.1\| hypothetical protein Salmonellentericaenterica_00707 [Salmonella ent... gi\|16760385 - gi\|16760385\|ref\|NP_456002.1\| hypothetical protein STY1590 [Salmonella enterica subsp. enterica serov... gi\|213052037 - gi\|213052037\|ref\|ZP_03344915.1\| hypothetical protein Salmoneentericaenterica_03297 [Salmonella enter... gi\|213612808 - gi\|213612808\|ref\|ZP_03370634.1\| hypothetical protein SentesTyp_10004 [Salmonella enterica subsp. ent... gi\|213647032 - gi\|213647032\|ref\|ZP_03377085.1\| hypothetical protein SentesTy_06811 [Salmonella enterica subsp. ente... gi\|213854557 - gi\|213854557\|ref\|ZP_03382797.1\| hypothetical protein SentesT_10759 [Salmonella enterica subsp. enter...	465.0	[0..1]	[317..1]
gi\|205323563, gi... - gi\|205323563\|gb\|EDZ11402.1\| protein YdgH [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|56413557, gi\|... - gi\|56413557\|ref\|YP_150632.1\| hypothetical protein SPA1377 [Salmonella enterica subsp. enterica serov...	465.0	[0..1]	[317..1]
gi\|224468542, gi... - gi\|224584015\|ref\|YP_002637813.1\| hypothetical protein SPC_2253 [Salmonella enterica subsp. enterica ... gi\|62127699, gi\|... - gi\|62180066\|ref\|YP_216483.1\| hypothetical protein SC1496 [Salmonella enterica subsp. enterica serova...	463.0	[0..1]	[317..1]
gi\|77975376, gi\|... - gi\|77975376\|ref\|ZP_00830912.1\| hypothetical protein YfreA_01001000 [Yersinia frederiksenii ATCC 3364...	463.0	[0..1]	[317..1]
gi\|85675042, gi\|... - gi\|89108445\|ref\|AP_002225.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown gi\|169889103, gi... - gi\|170081268\|ref\|YP_001730588.1\| hypothetical protein ECDH10B_1737 [Escherichia coli str. K-12 subst... EG13929 - DUF1471 family periplasmic protein / DUF1471 family periplasmic tri-domain protein, function unknown YDGH_ECOLI - Protein ydgH precursor - Escherichia coli gi\|238900820, gi... - gi\|238900820\|ref\|YP_002926616.1\| hypothetical protein BWG_1419 [Escherichia coli BW2952], gi\|2388629...	461.0	[0..1]	[317..1]
gi\|193070223, gi... - gi\|75234917\|ref\|ZP_00719196.1\| hypothetical protein EcolE1_01003201 [Escherichia coli E110019], gi\|1...	459.0	[0..1]	[317..1]
gi\|82776827, gi\|... - gi\|82776827\|ref\|YP_403176.1\| hypothetical protein SDY_1549 [Shigella dysenteriae Sd197], gi\|81240975... gi\|218351898, gi... - gi\|218695166\|ref\|YP_002402833.1\| hypothetical protein EC55989_1769 [Escherichia coli 55989], gi\|2183... gi\|81245440, gi\|... - gi\|82544029\|ref\|YP_407976.1\| hypothetical protein SBO_1532 [Shigella boydii Sb227], gi\|81245440\|gb\|A... gi\|218689550, gi... - gi\|218689550\|ref\|YP_002397762.1\| hypothetical protein ECED1_1803 [Escherichia coli ED1a], gi\|2184271... gi\|218369816, gi... - gi\|218699830\|ref\|YP_002407459.1\| hypothetical protein ECIAI39_1454 [Escherichia coli IAI39], gi\|2183... gi\|208730892, gi... - gi\|208816549\|ref\|ZP_03257669.1\| YdgH protein [Escherichia coli O157:H7 str. EC4045], gi\|208730892\|gb... gi\|83587939 - gi\|83587939\|ref\|ZP_00926565.1\| hypothetical protein Ecol1_01000972 [Escherichia coli 101-1] gi\|208810498, gi... - gi\|208810498\|ref\|ZP_03252374.1\| YdgH protein [Escherichia coli O157:H7 str. EC4206], gi\|208725014\|gb... gi\|187431181, gi... - gi\|75178501\|ref\|ZP_00698547.1\| hypothetical protein SboyB_01001421 [Shigella boydii BS512], gi\|18773... gi\|209157299, gi... - gi\|209395899\|ref\|YP_002270676.1\| YdgH protein [Escherichia coli O157:H7 str. EC4115], gi\|209157299\|g... gi\|157159019, gi... - gi\|75190644\|ref\|ZP_00703911.1\| hypothetical protein EcolE_01003954 [Escherichia coli E24377A], gi\|15... gi\|208820526, gi... - gi\|208820526\|ref\|ZP_03260846.1\| YdgH protein [Escherichia coli O157:H7 str. EC4042], gi\|208740649\|gb... gi\|237705545, gi... - gi\|237705545\|ref\|ZP_04536026.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|75195684, gi\|... - gi\|75195684\|ref\|ZP_00705754.1\| hypothetical protein EcolH_01001482 [Escherichia coli HS], gi\|1571610... gi\|217328971, gi... - gi\|217328971\|ref\|ZP_03445052.1\| YdgH protein [Escherichia coli O157:H7 str. TW14588], gi\|217318318\|g... gi\|251785062, gi... - gi\|251785062\|ref\|YP_002999366.1\| hypothetical protein B21_01563 [Escherichia coli BL21], gi\|24237733... gi\|190904004, gi... - gi\|75230947\|ref\|ZP_00717396.1\| hypothetical protein EcolB7_01000928 [Escherichia coli B7A], gi\|19116... gi\|215486780, gi... - gi\|215486780\|ref\|YP_002329211.1\| hypothetical protein E2348C_1689 [Escherichia coli O127:H6 str. E23... gi\|253324484, gi... - gi\|254288454\|ref\|YP_003054202.1\| hypothetical protein ECD_01573 [Escherichia coli BL21(DE3)], gi\|253... gi\|192927405, gi... - gi\|75257023\|ref\|ZP_00728583.1\| hypothetical protein EcolE2_01003073 [Escherichia coli E22], gi\|19306... gi\|218365243, gi... - gi\|218558474\|ref\|YP_002391387.1\| hypothetical protein ECS88_1649 [Escherichia coli S88], gi\|21836524... gi\|253973566, gi... - gi\|254161665\|ref\|YP_003044773.1\| hypothetical protein ECB_01573 [Escherichia coli B str. REL606], gi... gi\|188492042, gi... - gi\|75512963\|ref\|ZP_00735444.1\| hypothetical protein Ecol5_01002946 [Escherichia coli 53638], gi\|1884... gi\|218360939, gi... - gi\|218554171\|ref\|YP_002387084.1\| hypothetical protein ECIAI1_1654 [Escherichia coli IAI1], gi\|218360... gi\|254793221, gi... - gi\|254793221\|ref\|YP_003078058.1\| hypothetical protein ECSP_2168 [Escherichia coli O157:H7 str. TW143... gi\|91210815, gi\|... - gi\|91210815\|ref\|YP_540801.1\| hypothetical protein UTI89_C1792 [Escherichia coli UTI89], gi\|91072389\|... gi\|13361777, gi\|... - gi\|15831564\|ref\|NP_310337.1\| hypothetical protein ECs2310 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|115512914, gi... - gi\|117623790\|ref\|YP_852703.1\| hypothetical protein APECO1_687 [Escherichia coli APEC O1], gi\|1155129... gi\|124529241, gi... - gi\|124529241\|ref\|ZP_01700316.1\| protein of unknown function DUF1471 [Escherichia coli B], gi\|1245000... gi\|209769912, gi... - pir\|\|C85766 hypothetical protein Z2603 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|168775832, gi... - gi\|187768679\|gb\|EDU32523.1\| YdgH protein [Escherichia coli O157:H7 str. EC4196], gi\|168775832\|ref\|ZP... gi\|189360002, gi... - gi\|189360002\|gb\|EDU78421.1\| YdgH protein [Escherichia coli O157:H7 str. EC4486], gi\|168771144\|ref\|ZP... gi\|12515585, gi\|... - gi\|15802018\|ref\|NP_288039.1\| hypothetical protein Z2603 [Escherichia coli O157:H7 EDL933], gi\|125155... gi\|168789439, gi... - gi\|189370966\|gb\|EDU89382.1\| YdgH protein [Escherichia coli O157:H7 str. EC869], gi\|168789439\|ref\|ZP_... gi\|13361777, gi\|... - gi\|15831564\|ref\|NP_310337.1\| hypothetical protein ECs2310 [Escherichia coli O157:H7], gi\|13361777\|db... gi\|168783425, gi... - gi\|188999199\|gb\|EDU68185.1\| YdgH protein [Escherichia coli O157:H7 str. EC4076], gi\|168783425\|ref\|ZP... gi\|169754971, gi... - gi\|170020043\|ref\|YP_001724997.1\| hypothetical protein EcolC_2026 [Escherichia coli ATCC 8739], gi\|16... gi\|189376889, gi... - gi\|189376889\|gb\|EDU95305.1\| YdgH protein [Escherichia coli O157:H7 str. EC508], gi\|168800862\|ref\|ZP_... gi\|195938994 - gi\|195938994\|ref\|ZP_03084376.1\| hypothetical protein EscherichcoliO157_21632 [Escherichia coli O157:... gi\|170681099, gi... - gi\|170681099\|ref\|YP_001743650.1\| YdgH protein [Escherichia coli SMS-3-5], gi\|170518817\|gb\|ACB16995.1... gi\|168750585, gi... - gi\|188015228\|gb\|EDU53350.1\| YdgH protein [Escherichia coli O157:H7 str. EC4113], gi\|168750585\|ref\|ZP... gi\|168763695, gi... - gi\|189366191\|gb\|EDU84607.1\| YdgH protein [Escherichia coli O157:H7 str. EC4501], gi\|168763695\|ref\|ZP... gi\|168757482, gi... - gi\|189355533\|gb\|EDU73952.1\| YdgH protein [Escherichia coli O157:H7 str. EC4401], gi\|168757482\|ref\|ZP...	459.0	[0..1]	[317..1]
gi\|227886038, gi... - gi\|227886038\|ref\|ZP_04003843.1\| YdgH protein [Escherichia coli 83972], gi\|227836967\|gb\|EEJ47433.1\| Y... gi\|26247851, gi\|... - gi\|26247851\|ref\|NP_753891.1\| hypothetical protein c1996 [Escherichia coli CFT073], gi\|26108254\|gb\|AA...	458.0	[0..1]	[317..1]
gi\|110615125, gi... - gi\|110805577\|ref\|YP_689097.1\| hypothetical protein SFV_1619 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24112991, gi\|... - gi\|24112991\|ref\|NP_707501.1\| hypothetical protein SF1625 [Shigella flexneri 2a str. 301], gi\|2405195... gi\|30041367, gi\|... - gi\|30063118\|ref\|NP_837289.1\| hypothetical protein S1757 [Shigella flexneri 2a str. 2457T], gi\|300413...	457.0	[0..1]	[317..1]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKYTIIAS ALLSLTAFSA AHAAKELAPE QAAAIKPFDR ITITGRFNAI NEAADAVSRR  60
   61 ADKLGANSFY IQDINSSNNG GNWRVTADLY H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	2jnaA
Description:	No description for 2jnaA was found.

Predicted Domain #2

Region A:
Residues: [92-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDAEEVSKET QYRVFNGVRE LPKTEAYTLQ PYDTVSVSGF FRSQPDINDA ISKAAKEKGA  60
   61 YSFFIVRQVD ANQGGNQFIT AYVYKADAAK RLVQSPDVIP ADSDAGRAAL AAGGAAAANV 120
  121 EIPGVASS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [220-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTPSSDVGRF FETQSSTGKR YTVTLPDGTQ IQELNNTTAA QMVPFDSVSF TGHFNSMTDV  60
   61 SHEVAKRAAA KGAKYYHVTR QWQNKSGGNL SVSADLFK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.26
Match:	2nocA
Description:	No description for 2nocA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits